Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CFN77_RS11610 Genome accession   NZ_CP022319
Coordinates   2275755..2276090 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270755..2281090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS11590 (CFN77_11710) gcvT 2271233..2272330 (-) 1098 WP_096881618.1 glycine cleavage system aminomethyltransferase GcvT -
  CFN77_RS11595 (CFN77_11715) - 2272890..2274560 (+) 1671 WP_073413952.1 DEAD/DEAH box helicase -
  CFN77_RS11600 (CFN77_11720) - 2274575..2275372 (+) 798 WP_017367588.1 YqhG family protein -
  CFN77_RS11605 (CFN77_11725) - 2275557..2275721 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  CFN77_RS11610 (CFN77_11730) sinR 2275755..2276090 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  CFN77_RS11615 (CFN77_11735) tasA 2276158..2276958 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  CFN77_RS11620 (CFN77_11740) sipW 2277017..2277589 (-) 573 WP_017357979.1 signal peptidase I SipW -
  CFN77_RS11625 (CFN77_11745) tapA 2277639..2278166 (-) 528 WP_056705241.1 amyloid fiber anchoring/assembly protein TapA -
  CFN77_RS11630 (CFN77_11750) - 2278419..2278745 (+) 327 WP_058336653.1 DUF3889 domain-containing protein -
  CFN77_RS11635 (CFN77_11755) - 2278780..2278974 (-) 195 WP_008342191.1 YqzE family protein -
  CFN77_RS11640 (CFN77_11760) - 2279035..2279418 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  CFN77_RS11645 (CFN77_11765) comGF 2279415..2279912 (-) 498 WP_096881619.1 competence type IV pilus minor pilin ComGF -
  CFN77_RS11650 (CFN77_11770) comGE 2279854..2280168 (-) 315 WP_096881620.1 competence type IV pilus minor pilin ComGE -
  CFN77_RS11655 (CFN77_11775) comGD 2280152..2280598 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  CFN77_RS11660 (CFN77_11780) comGC 2280591..2280884 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=238317 CFN77_RS11610 WP_017357978.1 2275755..2276090(+) (sinR) [Bacillus altitudinis strain SGAir0031]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=238317 CFN77_RS11610 WP_017357978.1 2275755..2276090(+) (sinR) [Bacillus altitudinis strain SGAir0031]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment