Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | CFN77_RS00020 | Genome accession | NZ_CP022319 |
| Coordinates | 3057..4169 (+) | Length | 370 a.a. |
| NCBI ID | WP_007497487.1 | Uniprot ID | A0A9X0KBN2 |
| Organism | Bacillus altitudinis strain SGAir0031 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1538..81341 | 3057..4169 | within | 0 |
Gene organization within MGE regions
Location: 1538..81341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFN77_RS00010 (CFN77_00010) | dnaN | 1538..2674 (+) | 1137 | WP_039169040.1 | DNA polymerase III subunit beta | - |
| CFN77_RS00015 (CFN77_00015) | yaaA | 2825..3040 (+) | 216 | WP_008347598.1 | S4 domain-containing protein YaaA | - |
| CFN77_RS00020 (CFN77_00020) | recF | 3057..4169 (+) | 1113 | WP_007497487.1 | DNA replication/repair protein RecF | Machinery gene |
| CFN77_RS00025 (CFN77_00025) | remB | 4187..4432 (+) | 246 | WP_008360920.1 | extracellular matrix regulator RemB | - |
| CFN77_RS00030 (CFN77_00030) | gyrB | 4490..6406 (+) | 1917 | WP_024718422.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| CFN77_RS00035 (CFN77_00035) | gyrA | 6641..9145 (+) | 2505 | WP_039169042.1 | DNA gyrase subunit A | - |
| CFN77_RS00065 (CFN77_00065) | - | 14538..15506 (-) | 969 | WP_073416007.1 | YaaC family protein | - |
| CFN77_RS00070 (CFN77_00070) | guaB | 15628..17094 (+) | 1467 | WP_008342039.1 | IMP dehydrogenase | - |
| CFN77_RS00075 (CFN77_00075) | - | 17255..18580 (+) | 1326 | WP_096880872.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| CFN77_RS00080 (CFN77_00080) | - | 18623..20101 (-) | 1479 | WP_096880873.1 | PLP-dependent aminotransferase family protein | - |
| CFN77_RS00085 (CFN77_00085) | pdxS | 20348..21232 (+) | 885 | WP_039170343.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| CFN77_RS00090 (CFN77_00090) | pdxT | 21253..21843 (+) | 591 | WP_096880874.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| CFN77_RS00095 (CFN77_00095) | serS | 22161..23435 (+) | 1275 | WP_096880875.1 | serine--tRNA ligase | - |
| CFN77_RS20105 | - | 24032..24364 (+) | 333 | Protein_14 | methyl-accepting chemotaxis protein | - |
| CFN77_RS00110 (CFN77_00110) | - | 24674..25333 (-) | 660 | WP_024719578.1 | deoxynucleoside kinase | - |
| CFN77_RS00115 (CFN77_00115) | - | 25330..25953 (-) | 624 | WP_017366700.1 | deoxynucleoside kinase | - |
| CFN77_RS00120 (CFN77_00120) | - | 26033..27280 (-) | 1248 | WP_234703937.1 | glycoside hydrolase family 18 protein | - |
| CFN77_RS00125 (CFN77_00125) | - | 27380..27934 (-) | 555 | WP_024719580.1 | isochorismatase family cysteine hydrolase | - |
| CFN77_RS00130 (CFN77_00130) | tadA | 28014..28490 (+) | 477 | WP_008342015.1 | tRNA adenosine(34) deaminase TadA | - |
| CFN77_RS00140 (CFN77_00140) | dnaX | 29162..30874 (+) | 1713 | WP_008342013.1 | DNA polymerase III subunit gamma/tau | - |
| CFN77_RS00145 (CFN77_00145) | - | 30900..31223 (+) | 324 | WP_008342011.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CFN77_RS00150 (CFN77_00150) | recR | 31239..31835 (+) | 597 | WP_003218094.1 | recombination protein RecR | - |
| CFN77_RS00155 (CFN77_00155) | - | 31854..32078 (+) | 225 | WP_008342008.1 | YaaL family protein | - |
| CFN77_RS00160 (CFN77_00160) | - | 32145..32408 (+) | 264 | WP_012009068.1 | pro-sigmaK processing inhibitor BofA family protein | - |
| CFN77_RS00190 (CFN77_00190) | - | 37871..38062 (+) | 192 | WP_017359334.1 | sigma factor G inhibitor Gin | - |
| CFN77_RS00195 (CFN77_00195) | - | 38191..38805 (+) | 615 | WP_017359333.1 | 5-bromo-4-chloroindolyl phosphate hydrolysis family protein | - |
| CFN77_RS00200 (CFN77_00200) | - | 38827..39888 (+) | 1062 | WP_096880876.1 | toxic anion resistance protein | - |
| CFN77_RS00205 (CFN77_00205) | - | 39966..41372 (+) | 1407 | WP_096880877.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| CFN77_RS00210 (CFN77_00210) | tmk | 41369..42007 (+) | 639 | WP_096880878.1 | dTMP kinase | - |
| CFN77_RS00215 (CFN77_00215) | - | 42087..42416 (+) | 330 | WP_012008640.1 | cyclic-di-AMP receptor | - |
| CFN77_RS00220 (CFN77_00220) | - | 42429..42869 (+) | 441 | WP_096880879.1 | YaaR family protein | - |
| CFN77_RS00225 (CFN77_00225) | holB | 42881..43870 (+) | 990 | WP_041506542.1 | DNA polymerase III subunit delta' | - |
| CFN77_RS00230 (CFN77_00230) | - | 43873..44700 (+) | 828 | WP_024719352.1 | stage 0 sporulation family protein | - |
| CFN77_RS00235 (CFN77_00235) | yabA | 44715..45068 (+) | 354 | WP_096880880.1 | DNA replication initiation control protein YabA | - |
| CFN77_RS00240 (CFN77_00240) | - | 45124..45867 (+) | 744 | WP_017359328.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| CFN77_RS00245 (CFN77_00245) | - | 45854..46153 (+) | 300 | WP_019744059.1 | GIY-YIG nuclease family protein | - |
| CFN77_RS00250 (CFN77_00250) | rsmI | 46128..47009 (+) | 882 | WP_008341890.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| CFN77_RS00255 (CFN77_00255) | abrB | 47054..47344 (-) | 291 | WP_087975202.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| CFN77_RS00265 (CFN77_00265) | metG | 47864..49864 (+) | 2001 | WP_096880881.1 | methionine--tRNA ligase | - |
| CFN77_RS00270 (CFN77_00270) | - | 49946..50713 (+) | 768 | WP_017359325.1 | TatD family hydrolase | - |
| CFN77_RS00275 (CFN77_00275) | - | 50958..52160 (+) | 1203 | WP_096880882.1 | G5 and 3D domain-containing protein | - |
| CFN77_RS00280 (CFN77_00280) | rnmV | 52321..52881 (+) | 561 | WP_096882142.1 | ribonuclease M5 | - |
| CFN77_RS00285 (CFN77_00285) | rsmA | 52874..53752 (+) | 879 | WP_096880883.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| CFN77_RS00290 (CFN77_00290) | yabG | 53887..54771 (+) | 885 | WP_007496216.1 | sporulation peptidase YabG | - |
| CFN77_RS00295 (CFN77_00295) | veg | 54985..55242 (+) | 258 | WP_003217979.1 | biofilm formation stimulator Veg | - |
| CFN77_RS00300 (CFN77_00300) | - | 55404..55589 (+) | 186 | WP_017366434.1 | small, acid-soluble spore protein, alpha/beta type | - |
| CFN77_RS00305 (CFN77_00305) | ispE | 55737..56606 (+) | 870 | WP_017359321.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| CFN77_RS00310 (CFN77_00310) | purR | 56662..57495 (+) | 834 | WP_007496210.1 | pur operon repressor | - |
| CFN77_RS00315 (CFN77_00315) | ridA | 57534..57911 (+) | 378 | WP_008341860.1 | 2-iminobutanoate/2-iminopropanoate deaminase | - |
| CFN77_RS00320 (CFN77_00320) | spoVG | 58136..58432 (+) | 297 | WP_008357439.1 | septation regulator SpoVG | - |
| CFN77_RS00325 (CFN77_00325) | glmU | 58631..60001 (+) | 1371 | WP_045035090.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
| CFN77_RS00330 (CFN77_00330) | - | 60024..60977 (+) | 954 | WP_003217907.1 | ribose-phosphate diphosphokinase | - |
| CFN77_RS00335 (CFN77_00335) | - | 61116..61742 (+) | 627 | WP_008341853.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| CFN77_RS00340 (CFN77_00340) | pth | 61883..62449 (+) | 567 | WP_024719358.1 | aminoacyl-tRNA hydrolase | - |
| CFN77_RS00345 (CFN77_00345) | - | 62505..62735 (+) | 231 | WP_003217967.1 | anti-sigma-F factor Fin family protein | - |
| CFN77_RS00350 (CFN77_00350) | mfd | 62803..66336 (+) | 3534 | WP_096880884.1 | transcription-repair coupling factor | - |
| CFN77_RS00355 (CFN77_00355) | spoVT | 66476..67012 (+) | 537 | WP_007496196.1 | stage V sporulation protein T | - |
| CFN77_RS00360 (CFN77_00360) | - | 67217..68821 (+) | 1605 | WP_056703755.1 | polysaccharide biosynthesis protein | - |
| CFN77_RS00365 (CFN77_00365) | mazG | 68811..70295 (+) | 1485 | WP_096880885.1 | nucleoside triphosphate pyrophosphohydrolase | - |
| CFN77_RS00370 (CFN77_00370) | - | 70292..70552 (+) | 261 | WP_008341839.1 | RNA-binding S4 domain-containing protein | - |
| CFN77_RS00375 (CFN77_00375) | yabP | 70627..70935 (+) | 309 | WP_007496190.1 | sporulation protein YabP | - |
| CFN77_RS00380 (CFN77_00380) | yabQ | 70932..71570 (+) | 639 | WP_024719361.1 | spore cortex biosynthesis protein YabQ | - |
| CFN77_RS00385 (CFN77_00385) | - | 71589..71963 (+) | 375 | WP_007496186.1 | FtsB family cell division protein | - |
| CFN77_RS00390 (CFN77_00390) | - | 72046..72444 (+) | 399 | WP_003217901.1 | S1 domain-containing RNA-binding protein | - |
| CFN77_RS00405 (CFN77_00405) | spoIIE | 72998..75481 (+) | 2484 | WP_096880886.1 | stage II sporulation protein E | - |
| CFN77_RS00410 (CFN77_00410) | - | 75558..76292 (+) | 735 | WP_008341829.1 | vWA domain-containing protein | - |
| CFN77_RS00415 (CFN77_00415) | - | 76276..77286 (+) | 1011 | WP_096880887.1 | protein kinase domain-containing protein | - |
| CFN77_RS00420 (CFN77_00420) | tilS | 77383..78805 (+) | 1423 | Protein_68 | tRNA lysidine(34) synthetase TilS | - |
| CFN77_RS00425 (CFN77_00425) | hpt | 78802..79341 (+) | 540 | WP_007496175.1 | hypoxanthine phosphoribosyltransferase | - |
| CFN77_RS00430 (CFN77_00430) | ftsH | 79437..81341 (+) | 1905 | WP_024719367.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42574.65 Da Isoelectric Point: 7.1297
>NTDB_id=238282 CFN77_RS00020 WP_007497487.1 3057..4169(+) (recF) [Bacillus altitudinis strain SGAir0031]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID
Nucleotide
Download Length: 1113 bp
>NTDB_id=238282 CFN77_RS00020 WP_007497487.1 3057..4169(+) (recF) [Bacillus altitudinis strain SGAir0031]
ATGTACATTCAAAGTCTGGCGTTAACTTCGTACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA
ATGTACATTCAAAGTCTGGCGTTAACTTCGTACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Bacillus subtilis subsp. subtilis str. 168 |
83.198 |
99.73 |
0.83 |