Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CFN77_RS00255 Genome accession   NZ_CP022319
Coordinates   47054..47344 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SGAir0031     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42054..52344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS00215 (CFN77_00215) - 42087..42416 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  CFN77_RS00220 (CFN77_00220) - 42429..42869 (+) 441 WP_096880879.1 YaaR family protein -
  CFN77_RS00225 (CFN77_00225) holB 42881..43870 (+) 990 WP_041506542.1 DNA polymerase III subunit delta' -
  CFN77_RS00230 (CFN77_00230) - 43873..44700 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  CFN77_RS00235 (CFN77_00235) yabA 44715..45068 (+) 354 WP_096880880.1 DNA replication initiation control protein YabA -
  CFN77_RS00240 (CFN77_00240) - 45124..45867 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CFN77_RS00245 (CFN77_00245) - 45854..46153 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  CFN77_RS00250 (CFN77_00250) rsmI 46128..47009 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CFN77_RS00255 (CFN77_00255) abrB 47054..47344 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CFN77_RS00265 (CFN77_00265) metG 47864..49864 (+) 2001 WP_096880881.1 methionine--tRNA ligase -
  CFN77_RS00270 (CFN77_00270) - 49946..50713 (+) 768 WP_017359325.1 TatD family hydrolase -
  CFN77_RS00275 (CFN77_00275) - 50958..52160 (+) 1203 WP_096880882.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=238284 CFN77_RS00255 WP_087975202.1 47054..47344(-) (abrB) [Bacillus altitudinis strain SGAir0031]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=238284 CFN77_RS00255 WP_087975202.1 47054..47344(-) (abrB) [Bacillus altitudinis strain SGAir0031]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment