Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFK37_RS14350 Genome accession   NZ_CP022315
Coordinates   2976753..2978480 (+) Length   575 a.a.
NCBI ID   WP_089062505.1    Uniprot ID   A0A220U5R2
Organism   Virgibacillus phasianinus strain LM2416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2971753..2983480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK37_RS14325 (CFK37_14325) - 2973013..2973243 (+) 231 WP_089062500.1 exodeoxyribonuclease VII small subunit -
  CFK37_RS14330 (CFK37_14330) - 2973246..2974130 (+) 885 WP_089062501.1 polyprenyl synthetase family protein -
  CFK37_RS14335 (CFK37_14335) - 2974806..2975405 (+) 600 WP_089062502.1 hypothetical protein -
  CFK37_RS14340 (CFK37_14340) - 2975426..2976247 (+) 822 WP_089062503.1 TlyA family RNA methyltransferase -
  CFK37_RS14345 (CFK37_14345) argR 2976278..2976727 (+) 450 WP_089062504.1 transcriptional regulator ArgR -
  CFK37_RS14350 (CFK37_14350) recN 2976753..2978480 (+) 1728 WP_089062505.1 DNA repair protein RecN Machinery gene
  CFK37_RS14355 (CFK37_14355) spoIVB 2978651..2979934 (+) 1284 WP_089062506.1 SpoIVB peptidase -
  CFK37_RS14365 (CFK37_14365) spo0A 2980169..2980984 (+) 816 WP_281251611.1 sporulation transcription factor Spo0A -
  CFK37_RS14370 (CFK37_14370) - 2981047..2981286 (-) 240 WP_089062509.1 DUF2627 family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65400.91 Da        Isoelectric Point: 4.8774

>NTDB_id=238269 CFK37_RS14350 WP_089062505.1 2976753..2978480(+) (recN) [Virgibacillus phasianinus strain LM2416]
MLTELSIRDFAIIDELSLSFHEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEYVRHGAAKAEIEGLFSLDTNKHLIYLV
GENYGIEITDNMVVLHRTITSGGKSICRVNGKLVTLAILKEFGKTLIDIHSQHETQSLMQPESHIDLLDLYDTELINQTK
KEYKQLYERLQTLRKRYKELSENEQEMAHRLDLLTFQLDELEQASLNPDEDEDLEEERSSLANYDRIYLAIQDAYNALHG
EQKGIDWLNLAVQSMEEGKNYDPFIAEKAEELANHYYLIEELSFDLRNYRDNLQYEPERLNEIEFRLNEINRLKKKYGST
ANAIIDYMGKIQEEIEEITNKDSHLNKLQHQINETYQDAYLEAKQLHDSRKSAAEKLTKEIHSELKGLYLDKATFSISFT
SKKDMESETAETPLLLNKNGFDFVTFQISTNPGEPLKELSKVASGGELSRIMLALKKIFAKHQGVTSVIFDEVDTGVSGR
VAQAIAEKIVHVSEQSQVLCITHLPQVAAMADRHNLIEKMEKNKRTITFVKELTENQKVDELSRMITGAKLTDTARQHAT
EMLELADSIKQKNDG

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=238269 CFK37_RS14350 WP_089062505.1 2976753..2978480(+) (recN) [Virgibacillus phasianinus strain LM2416]
ATGCTGACAGAATTATCCATCCGTGATTTTGCAATTATTGACGAGCTGTCCTTATCATTTCATGAAGGTTTAACGGTCCT
GACCGGAGAAACTGGTGCAGGGAAATCGATTATCATAGATGCAGTTCAGTTACTGGCCGGGGGACGCGGTTCAGTTGAAT
ATGTGAGGCATGGTGCAGCTAAAGCAGAAATAGAAGGGCTTTTTTCACTCGATACAAATAAACACTTGATATATCTTGTG
GGTGAAAATTATGGAATTGAAATAACAGATAATATGGTTGTCTTACACCGAACAATTACATCTGGTGGGAAGAGTATCTG
CCGTGTAAATGGCAAATTAGTAACACTTGCTATCCTTAAAGAATTTGGAAAAACACTTATTGATATACATAGTCAACATG
AAACCCAAAGTTTAATGCAGCCAGAAAGTCATATTGATTTACTTGATTTATATGATACTGAATTAATAAATCAAACAAAA
AAGGAATACAAACAATTATATGAGCGATTACAAACGCTCCGCAAACGCTATAAGGAACTTAGTGAAAATGAACAGGAAAT
GGCCCACCGCTTAGATCTCCTGACATTCCAGTTGGATGAACTGGAGCAGGCTAGTTTAAATCCCGATGAAGATGAAGATT
TAGAAGAAGAAAGAAGCAGTTTAGCTAACTACGATCGAATATACCTTGCTATTCAGGATGCTTATAATGCATTACATGGA
GAACAAAAAGGCATTGACTGGCTTAACTTGGCGGTACAGTCAATGGAAGAAGGTAAGAATTATGACCCTTTTATCGCAGA
AAAAGCCGAGGAATTAGCTAATCATTATTATTTGATTGAAGAACTTTCATTTGATTTGCGGAATTATCGGGATAATTTGC
AATATGAGCCAGAACGATTAAATGAGATTGAATTCAGACTAAATGAAATAAATCGCTTAAAAAAGAAATACGGCTCAACG
GCAAATGCTATTATCGATTATATGGGGAAGATTCAAGAGGAAATCGAGGAAATAACCAATAAGGATTCACATTTAAATAA
ACTGCAACATCAAATAAACGAAACATATCAAGATGCCTATTTGGAAGCGAAGCAATTGCATGATAGTAGAAAAAGCGCTG
CTGAGAAATTAACGAAAGAAATTCATTCCGAATTGAAAGGTCTTTATTTAGATAAGGCAACATTTTCTATATCATTTACT
TCAAAAAAAGATATGGAATCAGAGACAGCAGAAACACCATTACTGTTAAACAAGAACGGTTTCGATTTCGTAACATTCCA
GATCTCAACCAACCCAGGTGAACCTTTAAAAGAATTAAGCAAAGTTGCATCAGGCGGTGAACTTTCCAGGATCATGTTAG
CGCTTAAAAAGATTTTTGCAAAACACCAGGGTGTGACAAGCGTTATTTTTGATGAAGTGGATACTGGTGTAAGTGGACGT
GTTGCACAGGCAATTGCCGAAAAAATTGTTCATGTTTCAGAACAATCACAGGTATTATGCATCACCCATCTGCCTCAAGT
TGCTGCAATGGCTGACCGTCATAATTTAATTGAGAAAATGGAAAAGAATAAACGAACCATAACATTTGTTAAAGAACTTA
CTGAAAATCAAAAAGTGGATGAATTAAGCAGAATGATCACAGGAGCAAAGTTGACAGATACTGCGCGCCAGCACGCAACT
GAAATGCTGGAATTGGCTGATTCCATAAAACAAAAAAATGATGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220U5R2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.007

99.826

0.539

Multiple sequence alignment