Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CFH90_RS16605 Genome accession   NZ_CP022298
Coordinates   3377168..3378322 (+) Length   384 a.a.
NCBI ID   WP_126038723.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain IC001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372168..3383322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS16590 (CFH90_16530) - 3373880..3375913 (-) 2034 WP_126038716.1 TonB-dependent copper receptor -
  CFH90_RS16595 (CFH90_16535) - 3375986..3376423 (-) 438 WP_126038720.1 DUF2946 family protein -
  CFH90_RS16600 (CFH90_16540) def 3376514..3377047 (-) 534 WP_004684452.1 peptide deformylase -
  CFH90_RS16605 (CFH90_16545) tsaP 3377168..3378322 (+) 1155 WP_126038723.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CFH90_RS16610 (CFH90_16550) dprA 3378345..3379478 (+) 1134 WP_126038726.1 DNA-processing protein DprA Machinery gene
  CFH90_RS16615 (CFH90_16555) - 3379524..3380093 (+) 570 WP_126038729.1 L-threonylcarbamoyladenylate synthase -
  CFH90_RS16620 (CFH90_16560) - 3380493..3381413 (-) 921 WP_126038732.1 DMT family transporter -
  CFH90_RS16625 (CFH90_16565) - 3381749..3382303 (+) 555 WP_087013940.1 hypothetical protein -
  CFH90_RS16630 (CFH90_16570) - 3382427..3382972 (+) 546 WP_126038736.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42249.19 Da        Isoelectric Point: 7.4711

>NTDB_id=238217 CFH90_RS16605 WP_126038723.1 3377168..3378322(+) (tsaP) [Acinetobacter johnsonii strain IC001]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRHYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=238217 CFH90_RS16605 WP_126038723.1 3377168..3378322(+) (tsaP) [Acinetobacter johnsonii strain IC001]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAGGCTGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCAAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTTCTAAATAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCGGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCATTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCAT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGGGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTAACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTCTTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTGCCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661

Multiple sequence alignment