Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CFH90_RS16350 Genome accession   NZ_CP022298
Coordinates   3320360..3321928 (+) Length   522 a.a.
NCBI ID   WP_126038639.1    Uniprot ID   A0A3Q8XFU6
Organism   Acinetobacter johnsonii strain IC001     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3315360..3326928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS16330 (CFH90_16270) - 3315836..3317140 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  CFH90_RS16335 (CFH90_16275) thrC 3317206..3318345 (+) 1140 WP_058868731.1 threonine synthase -
  CFH90_RS16340 (CFH90_16280) - 3318432..3319487 (-) 1056 WP_126038636.1 serine hydrolase -
  CFH90_RS16345 (CFH90_16285) - 3319703..3320338 (+) 636 WP_004692836.1 response regulator -
  CFH90_RS16350 (CFH90_16290) pilS 3320360..3321928 (+) 1569 WP_126038639.1 sensor histidine kinase Regulator
  CFH90_RS16355 (CFH90_16295) pilR 3321941..3323365 (+) 1425 WP_410169723.1 sigma-54-dependent transcriptional regulator Regulator
  CFH90_RS16360 (CFH90_16300) - 3323370..3324545 (-) 1176 WP_126038645.1 S41 family peptidase -
  CFH90_RS16365 (CFH90_16305) gpmI 3324564..3326111 (-) 1548 WP_126038648.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59677.25 Da        Isoelectric Point: 6.4922

>NTDB_id=238214 CFH90_RS16350 WP_126038639.1 3320360..3321928(+) (pilS) [Acinetobacter johnsonii strain IC001]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRISLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLINPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQASDPQQELLQNMITKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDPAQIQFDEQQLRQVLINLIRNAIRHNATEAEHIQIRVYSYKNLVHIEVCDFGDGVAKQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=238214 CFH90_RS16350 WP_126038639.1 3320360..3321928(+) (pilS) [Acinetobacter johnsonii strain IC001]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTTTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
TTGTTGTTTGTTGTTGGTTTATCTGCTGACCTATGAGCAGTTGTTTTCGAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATATCACTTCAGCTC
ACCTTGTTGTTTATTGTCGATGTCATTAGCCTCAGTTTACTCACTTTCGCAACCGATGGTCCGAACTTACAGTTAAGTTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACATTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGCGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTCCGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAATCCCAAGAACTGGACCAACTACAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCATATGGTACTCATTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCAATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTCCTTAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAAACACTCACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAACTGGCTGCACTGGGTCAGCTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACTCAAGCCAATGAGTTGATGCAAGCCAGTGATCCACAACAAGAGCT
GTTGCAGAACATGATTACCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCCAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATCCGGCATAATGCAACGGAAGCTGAACATATTCAAATTCGCGTCTATAGCTATAAAAACCTTGTTCACATTG
AGGTCTGCGATTTTGGTGATGGGGTCGCCAAACAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8XFU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.693

99.808

0.596

Multiple sequence alignment