Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   CFH90_RS05050 Genome accession   NZ_CP022298
Coordinates   1026556..1031034 (+) Length   1492 a.a.
NCBI ID   WP_126035775.1    Uniprot ID   A0A3Q8XED0
Organism   Acinetobacter johnsonii strain IC001     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 1021556..1036034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS05025 (CFH90_05015) - 1022027..1022665 (-) 639 WP_087010454.1 hypothetical protein -
  CFH90_RS05030 (CFH90_05020) pilG 1022946..1023329 (+) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  CFH90_RS05035 (CFH90_05025) - 1023357..1023725 (+) 369 WP_004694491.1 response regulator -
  CFH90_RS05040 (CFH90_05030) - 1023731..1024267 (+) 537 WP_004694490.1 chemotaxis protein CheW -
  CFH90_RS05045 (CFH90_05035) - 1024318..1026390 (+) 2073 WP_126035773.1 methyl-accepting chemotaxis protein -
  CFH90_RS05050 (CFH90_05040) chpA 1026556..1031034 (+) 4479 WP_126035775.1 Hpt domain-containing protein Regulator
  CFH90_RS05055 (CFH90_05045) - 1031039..1031494 (+) 456 WP_126035777.1 hypothetical protein -
  CFH90_RS05060 (CFH90_05050) dapE 1031561..1032694 (-) 1134 WP_126035779.1 succinyl-diaminopimelate desuccinylase -
  CFH90_RS05065 (CFH90_05055) - 1032811..1032957 (-) 147 WP_126035781.1 entericidin A/B family lipoprotein -
  CFH90_RS05070 (CFH90_05060) - 1033114..1033992 (-) 879 WP_126035783.1 DUF1853 family protein -
  CFH90_RS05075 (CFH90_05065) - 1034090..1034482 (+) 393 WP_058869166.1 YbaN family protein -
  CFH90_RS05080 (CFH90_05070) elsL 1034482..1034985 (+) 504 WP_126035784.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  CFH90_RS05085 (CFH90_05075) - 1035224..1035970 (+) 747 WP_004694685.1 IS5 family transposase -

Sequence


Protein


Download         Length: 1492 a.a.        Molecular weight: 166631.32 Da        Isoelectric Point: 4.3912

>NTDB_id=238195 CFH90_RS05050 WP_126035775.1 1026556..1031034(+) (chpA) [Acinetobacter johnsonii strain IC001]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLYQFKLYPTFKAMQKIDLDLRPLVLIGQQLQQNQSLEPVLEELLQL
SNHLNDNDVVTGLELIDIEVVDSEPQVAAAPEQDDQVHDVLEETLAIFIEEAEDHLATIDQFLNADETKVQDYNSLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLVKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIEPVAEAIVSGNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTEKVDYPATATINVLHNIQSLVEGTTVT
TTASEPLVEAFVAAVEEPLSNIDRTIEAEAAAVESATAIEELSIVENTDVTAVEQLDTPSLVQEEAVSAVEEAASLLSIV
EETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDP
LLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLD
GGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADF
DPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTA
STLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDAEQRSAAKKSATGQIELNISRQGTDVIVSFKDDGKG
IDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFII
RVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDQYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHS
LPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGNGHVCLILDGQNIARQILSTKRVTHAADHR
DFGRHQDTRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEI
HQTLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4479 bp        

>NTDB_id=238195 CFH90_RS05050 WP_126035775.1 1026556..1031034(+) (chpA) [Acinetobacter johnsonii strain IC001]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACCC
ATCAAGAAACCTTGTTGAGCATACGCCGTCACTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAATCAGCA
GGTGAAACAGCATGGGCGGTTGAAGACACCTTAAACCGTGTGATTTCAGGGGCTGTACCGCTTACGGCAACGGTTCAAAA
ATTTGCTAAAACAGTATTTAAACTGTATCAATTTAAACTGTACCCGACTTTTAAAGCGATGCAGAAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAGCCTGTACTAGAAGAGTTATTACAACTG
TCTAATCATTTAAATGATAATGATGTTGTGACAGGATTAGAGCTGATCGATATCGAGGTGGTTGACTCTGAGCCACAAGT
TGCAGCTGCTCCTGAACAGGATGATCAAGTACATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCGGATGAAACCAAAGTACAAGATTACAATAGTTTAATCCGTGCTTTA
CATACATTGCGTGGTAGTTCGTCTATGGCGCAAATTGAGCATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACCTCGAAGGAAATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGACT
ATTTACACGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTACGCCACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATTGAAGACGTAGATGATGAGCTAAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGGGCTAAAGTTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CCAAACAATTGCTGGAATTCACCAATAACCGTGCTGCTCAAGGCATTCATGACTTTACTTCTGAGCTATACGCGGGTTAT
CAAGCCTTACTGGTAAAGCCAGAACTACTCAATGTAGATTATGCATACGAATTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAACAAGATGTTGAATCGACTTCGACGACGGTAATTGAACCTGTTGCTGAGGCTATTGTTTCTGGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCCTCGGATCATCAGTACAAGCAATCGAATACAGCCAA
TACCGATTTTGATGATGATTTGCTCGATATCTTCTTGGAAGAAGCCGAAGAATTATTGATGGGGATGGATCAGGATCTCA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAACGTGTGATTCGTCAGCAAAT
TGCCACAACGCCACAGTTGATCAGCATCATACGTTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGTACTG
AGAAGGTTGATTATCCAGCAACAGCGACCATCAATGTCCTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGCATCCGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATATAGATAGAACGATTGA
AGCTGAGGCAGCTGCGGTTGAGTCAGCAACTGCGATTGAAGAGCTGAGTATAGTTGAAAACACTGATGTTACTGCCGTTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAGCGCTGTTGAAGAAGCAGCCAGTCTGTTATCAATTGTT
GAAGAAACCTTCTTGGAAGAAGCAGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGTAG
TGACCGTAGTGTGTTACTACAATTGCAACGTGCTGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAGCCCG
TTGGTGCGATTGCTTATGAGCTAGAAACCACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCA
TTATTGCAAACCGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGATGGTTTGAAAAACAG
CTTAGCATCTATTGATTATGTGGATGTGATTGCGCAATTACCGACGCGTGTAACTCAAATTGATTTACTCAATGCAGTAC
CAAGTTTTGAGTTTGTGCAGGGTGATGGTACTGAGCCGCCAGCAATGCTAGGTGAGTGGAAAGAAACGACTCACTTGGAT
GGCGGTAATGAGATGATCCGTATCTCAGCTGATTTGGTTGAAAAAATGATCGACCTGTCAGGTGAAAATGCAATTAACCG
TTCACGTATTGAAATGGATTTAGGTCAACTCGGCAATACGTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCGGATC
AGTTGCGTCGAATGGAAGGCGAGCTTGAGAGTCAAATTATTGCCAAGCACGGTTCTGAAAACTCGCGCTATGCAGACTTT
GACCCCTTGGAGATGGACCAATATTCATCGCTCAATCAATTGTCTAAATCCTTAGCCGAATCGGCTTCGGATTTGGTCGA
CTTCAAGAGCACTTTGGCTGAAAAAATTCGTGATGCAGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAGATTC
AAGAAAGCTTAATGCGGACACGTTTGGTGCCGTTCTCACGTATGTTGCCGCGTTTACAACGTATTGTGCGTCAGACAGCC
TCAACCTTGAACCGTCCAACGGAATTGGTCGTTCATAACACTGAAGGTGAGTTGGACCGTACAATTCTTGAACGTTTGGT
TACGCCGTTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATGCGGAACAACGTAGTGCTGCGAAAAAAT
CAGCGACAGGCCAAATTGAACTAAACATTAGCCGTCAAGGTACAGACGTTATCGTCAGTTTTAAAGATGATGGTAAGGGT
ATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACTTAGGTTTAATTAAAGCCGATCAAGTGTTGGATAAACAGGAAAT
ATTACAGTTTATTTTCCATCCGGGTTTCAGTACAGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATG
TGGTACAAAGTGAAATTAAAGCACTAGGTGGACATGTCACGGTTGAATCGGAAATTGGATTCGGTACAACCTTCATTATT
CGTGTACCGACTACGGTAGCTGTGAGTGATGCCTTGATGGTAAAAGCAGGTGATCAACAATATGCGATTCCATTGGCGCA
GATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCAGTATTTCCACAGCAAAGATGACCAATTCAAAATTGATG
GTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATTCCACGTTTGAGTAATATTGGACATTCA
TTGCCAGTGTTGTTGATTAAAGGCAACAGTGGACAAACCATTGCCTTATTGGTCGATCAGTTGATTGGTTCACGTGCGCA
AATTGTAGTGAAGCCGGTTGGACAACAGTTTGCCAGCATTGGTGCAATTGCGGGTGCAACGATTTTGGGTAATGGCCATG
TGTGTTTGATTTTAGATGGTCAGAACATTGCACGTCAGATTTTAAGTACCAAGCGTGTGACGCATGCAGCCGATCACCGT
GACTTTGGTCGTCATCAAGATACGCGTCGTTTAGTGATGATTGTGGATGACTCAGTTACGGTACGTAAGGTCACATCGCG
CTTATTAGAGCGTCAAGGCTTTGATATTGTAACTGCAAAAGACGGTGTCGATGCGATGGAGCAGCTAGAGAGCGTTAAAC
CGGACTTGATGTTGCTAGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAACTTGGTTCGTCACCACGAAATT
CACCAGACCTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTAGGCGTGAC
ACACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAGTTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.042

100

0.621


Multiple sequence alignment