Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CFH90_RS02330 Genome accession   NZ_CP022298
Coordinates   472906..473553 (-) Length   215 a.a.
NCBI ID   WP_126035174.1    Uniprot ID   A0A3Q8XDA6
Organism   Acinetobacter johnsonii strain IC001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467906..478553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS02295 (CFH90_02280) mlaE 468248..469027 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  CFH90_RS02300 (CFH90_02285) - 469027..469701 (+) 675 WP_004691366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CFH90_RS02305 (CFH90_02290) - 469722..470357 (+) 636 WP_087527364.1 phospholipid-binding protein MlaC -
  CFH90_RS02310 (CFH90_02295) - 470369..470656 (+) 288 WP_126035170.1 lipid asymmetry maintenance protein MlaB -
  CFH90_RS02315 (CFH90_02300) - 470739..471752 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  CFH90_RS02320 (CFH90_02305) - 471905..472504 (+) 600 WP_004977937.1 TIGR00730 family Rossman fold protein -
  CFH90_RS02325 (CFH90_02310) - 472501..472905 (+) 405 WP_126035172.1 NUDIX hydrolase -
  CFH90_RS02330 (CFH90_02315) comF 472906..473553 (-) 648 WP_126035174.1 ComF family protein Machinery gene
  CFH90_RS02335 (CFH90_02320) recG 473540..475585 (-) 2046 WP_126035176.1 ATP-dependent DNA helicase RecG -
  CFH90_RS02340 (CFH90_02325) - 475619..476434 (+) 816 WP_126035178.1 NAD-dependent epimerase/dehydratase family protein -
  CFH90_RS02345 (CFH90_02330) - 476626..476849 (+) 224 Protein_457 DUF6500 family protein -
  CFH90_RS02350 (CFH90_02335) - 476978..477295 (+) 318 WP_126035180.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24939.14 Da        Isoelectric Point: 9.7762

>NTDB_id=238186 CFH90_RS02330 WP_126035174.1 472906..473553(-) (comF) [Acinetobacter johnsonii strain IC001]
MPMFSHLRHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGVLQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKISAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=238186 CFH90_RS02330 WP_126035174.1 472906..473553(-) (comF) [Acinetobacter johnsonii strain IC001]
ATGCCTATGTTTAGTCATTTACGGCACACCGCCAAACAGTTGCTACACAAAGCTCAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCATTCAGTCTGTCTGGACTGCTGGCAACAACTCCCACTGCATCCACAAACCGTTGAAAAACAAGAAC
TGAGTATTCATGTCGCAGGACAGTATCAATATCCTTTAGACCATCTGATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCGTTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTATAACCAATCGATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGCCAGTATGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAATCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8XDA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.763

90.233

0.53
  comF Acinetobacter baumannii D1279779

58.763

90.233

0.53

Multiple sequence alignment