Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFI10_RS16455 Genome accession   NZ_CP022297
Coordinates   3420978..3422351 (-) Length   457 a.a.
NCBI ID   WP_206836536.1    Uniprot ID   -
Organism   Marinobacterium iners strain IC961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415978..3427351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI10_RS16435 (CFI10_16355) glyA 3416101..3417357 (-) 1257 WP_206836524.1 serine hydroxymethyltransferase -
  CFI10_RS16440 (CFI10_16360) ettA 3417600..3419258 (+) 1659 WP_206836528.1 energy-dependent translational throttle protein EttA -
  CFI10_RS16445 (CFI10_16365) - 3419324..3420433 (-) 1110 WP_242530028.1 GGDEF domain-containing protein -
  CFI10_RS16450 (CFI10_16370) - 3420594..3420977 (+) 384 WP_206836534.1 PilZ domain-containing protein -
  CFI10_RS16455 (CFI10_16375) radA 3420978..3422351 (-) 1374 WP_206836536.1 DNA repair protein RadA Machinery gene
  CFI10_RS16460 (CFI10_16380) - 3422490..3423767 (+) 1278 WP_206836538.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CFI10_RS16465 (CFI10_16385) - 3423826..3424368 (+) 543 WP_206836542.1 glutathione peroxidase -
  CFI10_RS16470 (CFI10_16390) - 3424467..3424700 (+) 234 WP_206836545.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  CFI10_RS16475 (CFI10_16395) - 3424682..3425098 (+) 417 WP_242530029.1 type II toxin-antitoxin system VapC family toxin -
  CFI10_RS16480 (CFI10_16400) - 3425174..3426619 (+) 1446 WP_206836547.1 DUF3375 domain-containing protein -
  CFI10_RS16485 (CFI10_16405) - 3426636..3427235 (+) 600 WP_206836551.1 DUF4194 domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48809.21 Da        Isoelectric Point: 7.1651

>NTDB_id=238172 CFI10_RS16455 WP_206836536.1 3420978..3422351(-) (radA) [Marinobacterium iners strain IC961]
MAKPKTAFVCNDCGADYRKWQGQCNACGAWNTITEVRLGSDAGGARSNRFEGYAGGAGKQKKVVSLSEVALEEMPRFSSG
SSELDRVLGGGLVPGSAVLIGGHPGAGKSTLLLQTMCHLVAQMPALYITGEESLQQVAMRAARLGLKADQLQMLSETSVE
TICDLANELQPKVMVIDSIQVMHVTDVQSAPGSVSQVRESAAFLTRYAKQTGTVLFLVGHVTKDGSLAGPKVLEHMIDCS
LQLEGSSDSRFRTLRSHKNRFGAVNELGVFAMLENGLKEVKNPSSIFLSRGSEPSPGSVVMVVWEGTRPLLVELQALVDT
SHLSNPRRVAVGMDQNRLAMLLAVLNRHGGLMTGDQDVFVNVVGGVKVLETSADLALLLAIVSSFRDRPLSQELMVFGEV
GLSGEIRPVPNGQERIREAAKHGFKRAIVPLANVPREPLAGMEVVGVKTLSEALDAI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=238172 CFI10_RS16455 WP_206836536.1 3420978..3422351(-) (radA) [Marinobacterium iners strain IC961]
ATGGCCAAACCCAAAACCGCCTTTGTCTGCAATGATTGCGGCGCCGACTACCGCAAGTGGCAGGGGCAGTGCAACGCCTG
CGGGGCCTGGAACACCATCACTGAAGTTCGTCTTGGTTCGGATGCCGGTGGTGCCCGCAGCAATCGGTTTGAGGGGTATG
CCGGAGGTGCCGGCAAGCAGAAAAAGGTGGTCAGCCTCAGTGAGGTGGCGCTGGAAGAGATGCCGCGTTTTTCCAGTGGC
AGCAGTGAGCTGGACCGGGTGCTCGGCGGTGGGCTGGTACCGGGCTCGGCAGTGTTGATCGGGGGCCACCCGGGTGCGGG
CAAGAGTACCCTGCTGCTGCAGACCATGTGCCATCTGGTGGCGCAGATGCCCGCGCTGTACATCACCGGTGAGGAGTCGT
TGCAACAGGTGGCGATGCGCGCTGCCCGACTGGGGCTGAAAGCGGACCAGCTGCAGATGCTGTCCGAAACCTCGGTGGAA
ACCATCTGTGACCTGGCCAATGAATTGCAGCCAAAGGTGATGGTGATCGACTCCATTCAGGTGATGCATGTGACCGATGT
GCAGTCAGCACCGGGCTCGGTATCACAGGTGCGCGAAAGCGCTGCGTTTCTGACCCGCTATGCCAAGCAAACCGGCACCG
TGCTGTTTCTGGTCGGGCATGTGACCAAGGACGGTTCGCTGGCTGGTCCCAAGGTGCTGGAGCATATGATCGATTGTTCG
CTGCAGCTGGAAGGTTCGTCCGACAGCCGTTTCCGTACCCTGCGCAGTCACAAGAACCGTTTCGGTGCCGTCAACGAGCT
GGGCGTGTTCGCCATGCTGGAAAATGGCCTCAAAGAGGTGAAGAACCCCAGCTCCATTTTTCTCAGTCGTGGCAGCGAGC
CCAGCCCCGGCAGCGTAGTGATGGTGGTGTGGGAGGGTACAAGGCCGCTGCTGGTGGAGTTGCAGGCACTGGTGGACACT
TCGCATCTGTCCAACCCGCGTCGCGTGGCGGTAGGGATGGATCAGAATCGTTTGGCGATGCTGTTGGCGGTGCTGAATCG
CCACGGTGGCTTGATGACCGGGGATCAGGATGTGTTCGTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCAGTGCTG
ACCTGGCACTGTTGCTGGCGATTGTGTCCAGTTTCCGTGATCGGCCGCTGTCACAGGAGTTGATGGTGTTCGGTGAAGTG
GGGCTGTCCGGCGAGATTCGGCCGGTGCCCAATGGTCAGGAGCGAATTCGTGAGGCGGCCAAGCATGGTTTCAAGCGAGC
AATCGTGCCATTGGCGAACGTGCCGCGCGAGCCGCTGGCGGGAATGGAAGTGGTGGGGGTCAAAACCCTGTCGGAAGCGC
TGGATGCGATCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.14

100

0.481
  radA Streptococcus mitis NCTC 12261

42.424

100

0.429
  radA Streptococcus pneumoniae Rx1

42.424

100

0.429
  radA Streptococcus pneumoniae D39

42.424

100

0.429
  radA Streptococcus pneumoniae R6

42.424

100

0.429
  radA Streptococcus pneumoniae TIGR4

42.424

100

0.429
  radA Streptococcus mitis SK321

42.576

100

0.427

Multiple sequence alignment