Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3U_RS22465 Genome accession   NZ_CP028126
Coordinates   3815134..3815649 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O26 str. RM10386     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810134..3820649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3U_RS22440 (I3U_22420) ygaZ 3810533..3811270 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  I3U_RS22445 (I3U_22425) ygaH 3811260..3811595 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I3U_RS22450 (I3U_22430) emrR 3811686..3812216 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I3U_RS22455 (I3U_22435) emrA 3812343..3813515 (+) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I3U_RS22460 (I3U_22440) emrB 3813532..3815070 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  I3U_RS22465 (I3U_22445) luxS 3815134..3815649 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  I3U_RS22470 (I3U_22450) gshA 3815799..3817355 (-) 1557 WP_000611769.1 glutamate--cysteine ligase -
  I3U_RS22475 (I3U_22455) yqaA 3817428..3817856 (-) 429 WP_001287457.1 YqaA family protein -
  I3U_RS22480 (I3U_22460) yqaB 3817853..3818419 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I3U_RS22510 (I3U_22490) csrA 3819744..3819929 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=238070 I3U_RS22465 WP_001130207.1 3815134..3815649(-) (luxS) [Escherichia coli O26 str. RM10386]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=238070 I3U_RS22465 WP_001130207.1 3815134..3815649(-) (luxS) [Escherichia coli O26 str. RM10386]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment