Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSSX_RS17980 Genome accession   NZ_CP022287
Coordinates   3474836..3475525 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SX01705     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3469836..3480525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSSX_RS17945 (BSSX_3700) flgN 3470016..3470498 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BSSX_RS17950 (BSSX_3701) flgM 3470514..3470780 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSSX_RS17955 (BSSX_3702) yvyF 3470861..3471280 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BSSX_RS17960 (BSSX_3703) comFC 3471354..3472076 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  BSSX_RS17965 (BSSX_3704) comFB 3472040..3472336 (-) 297 WP_015483764.1 late competence protein ComFB -
  BSSX_RS17970 (BSSX_3705) comFA 3472396..3473787 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  BSSX_RS17975 (BSSX_3706) fakBA 3473893..3474738 (-) 846 WP_003227986.1 DegV family protein -
  BSSX_RS17980 (BSSX_3707) degU 3474836..3475525 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSSX_RS17985 (BSSX_3708) degS 3475608..3476765 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BSSX_RS17990 (BSSX_3709) yvyE 3476982..3477635 (+) 654 WP_003227979.1 YigZ family protein -
  BSSX_RS17995 (BSSX_3710) tagV 3477635..3478810 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BSSX_RS18000 (BSSX_3711) tagO 3478883..3479959 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=238022 BSSX_RS17980 WP_003219701.1 3474836..3475525(-) (degU) [Bacillus subtilis strain SX01705]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=238022 BSSX_RS17980 WP_003219701.1 3474836..3475525(-) (degU) [Bacillus subtilis strain SX01705]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment