Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BSSX_RS17970 Genome accession   NZ_CP022287
Coordinates   3472396..3473787 (-) Length   463 a.a.
NCBI ID   WP_015384785.1    Uniprot ID   -
Organism   Bacillus subtilis strain SX01705     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3467396..3478787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSSX_RS17935 (BSSX_3698) flgL 3467567..3468463 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  BSSX_RS17940 (BSSX_3699) flgK 3468474..3469997 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  BSSX_RS17945 (BSSX_3700) flgN 3470016..3470498 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BSSX_RS17950 (BSSX_3701) flgM 3470514..3470780 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSSX_RS17955 (BSSX_3702) yvyF 3470861..3471280 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BSSX_RS17960 (BSSX_3703) comFC 3471354..3472076 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  BSSX_RS17965 (BSSX_3704) comFB 3472040..3472336 (-) 297 WP_015483764.1 late competence protein ComFB -
  BSSX_RS17970 (BSSX_3705) comFA 3472396..3473787 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  BSSX_RS17975 (BSSX_3706) fakBA 3473893..3474738 (-) 846 WP_003227986.1 DegV family protein -
  BSSX_RS17980 (BSSX_3707) degU 3474836..3475525 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSSX_RS17985 (BSSX_3708) degS 3475608..3476765 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BSSX_RS17990 (BSSX_3709) yvyE 3476982..3477635 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52498.54 Da        Isoelectric Point: 9.9354

>NTDB_id=238021 BSSX_RS17970 WP_015384785.1 3472396..3473787(-) (comFA) [Bacillus subtilis strain SX01705]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLNLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=238021 BSSX_RS17970 WP_015384785.1 3472396..3473787(-) (comFA) [Bacillus subtilis strain SX01705]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGTTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCAATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment