Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I3W_RS16900 Genome accession   NZ_CP028122
Coordinates   3008704..3009441 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O43 str. RM10042     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3003704..3014441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3W_RS16885 (I3W_16880) clpC 3004158..3006731 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I3W_RS16890 (I3W_16885) yfiH 3006861..3007592 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  I3W_RS16895 (I3W_16890) rluD 3007589..3008569 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I3W_RS16900 (I3W_16895) comL 3008704..3009441 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I3W_RS16910 (I3W_16905) raiA 3009712..3010053 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I3W_RS16915 (I3W_16910) pheL 3010157..3010204 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I3W_RS16920 (I3W_16915) pheA 3010303..3011463 (+) 1161 WP_108942449.1 bifunctional chorismate mutase/prephenate dehydratase -
  I3W_RS16925 (I3W_16920) tyrA 3011506..3012627 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I3W_RS16930 (I3W_16925) aroF 3012638..3013708 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I3W_RS16935 (I3W_16930) yfiL 3013918..3014283 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=237983 I3W_RS16900 WP_000197686.1 3008704..3009441(+) (comL) [Escherichia coli O43 str. RM10042]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=237983 I3W_RS16900 WP_000197686.1 3008704..3009441(+) (comL) [Escherichia coli O43 str. RM10042]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376