Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | Aba7804_RS21620 | Genome accession | NZ_CP022283 |
| Coordinates | 4093724..4094584 (+) | Length | 286 a.a. |
| NCBI ID | WP_001152283.1 | Uniprot ID | A0A009QK25 |
| Organism | Acinetobacter baumannii strain 7804 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4088724..4099584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba7804_RS19790 (Aba7804_19790) | secG | 4089329..4089658 (-) | 330 | WP_000555570.1 | preprotein translocase subunit SecG | - |
| Aba7804_RS19795 (Aba7804_19795) | tpiA | 4089671..4090465 (-) | 795 | WP_000016932.1 | triose-phosphate isomerase | - |
| Aba7804_RS19800 (Aba7804_19800) | pilB | 4090756..4092468 (+) | 1713 | WP_001274992.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Aba7804_RS19805 (Aba7804_19805) | pilC | 4092498..4093724 (+) | 1227 | WP_000279216.1 | type II secretion system F family protein | Machinery gene |
| Aba7804_RS21620 (Aba7804_19810) | pilD | 4093724..4094584 (+) | 861 | WP_001152283.1 | prepilin peptidase | Machinery gene |
| Aba7804_RS19815 (Aba7804_19815) | coaE | 4094586..4095182 (+) | 597 | WP_000874125.1 | dephospho-CoA kinase | - |
| Aba7804_RS19820 (Aba7804_19820) | - | 4095179..4096092 (-) | 914 | Protein_3836 | DMT family transporter | - |
| Aba7804_RS19825 (Aba7804_19825) | rlmB | 4096128..4096877 (-) | 750 | WP_001118149.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| Aba7804_RS19830 (Aba7804_19830) | - | 4096979..4097305 (-) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| Aba7804_RS19835 (Aba7804_19835) | - | 4097382..4098692 (-) | 1311 | WP_000753283.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32144.59 Da Isoelectric Point: 7.1041
>NTDB_id=237954 Aba7804_RS21620 WP_001152283.1 4093724..4094584(+) (pilD) [Acinetobacter baumannii strain 7804]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=237954 Aba7804_RS21620 WP_001152283.1 4093724..4094584(+) (pilD) [Acinetobacter baumannii strain 7804]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter nosocomialis M2 |
98.601 |
100 |
0.986 |
| pilD | Acinetobacter baumannii D1279779 |
98.252 |
100 |
0.983 |
| pilD | Vibrio cholerae strain A1552 |
53.676 |
95.105 |
0.51 |
| pilD | Vibrio campbellii strain DS40M4 |
52.399 |
94.755 |
0.497 |
| pilD | Neisseria gonorrhoeae MS11 |
47.727 |
92.308 |
0.441 |