Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Aba7804_RS03055 Genome accession   NZ_CP022283
Coordinates   638704..639522 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 7804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633704..644522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba7804_RS03020 - 634287..634417 (-) 131 Protein_574 hypothetical protein -
  Aba7804_RS03025 (Aba7804_03020) rpoZ 634456..634734 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Aba7804_RS03030 (Aba7804_03025) gmk 634807..635436 (-) 630 WP_000015937.1 guanylate kinase -
  Aba7804_RS03035 (Aba7804_03030) ispH 635559..636509 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Aba7804_RS03040 (Aba7804_03035) fimU 636679..637152 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Aba7804_RS03045 (Aba7804_03040) pilV 637146..637706 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  Aba7804_RS03050 (Aba7804_03045) - 637707..638707 (+) 1001 Protein_580 PilW family protein -
  Aba7804_RS03055 (Aba7804_03050) pilX 638704..639522 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Aba7804_RS03060 (Aba7804_03055) - 639534..643387 (+) 3854 Protein_582 PilC/PilY family type IV pilus protein -
  Aba7804_RS03065 (Aba7804_03060) - 643400..643881 (+) 482 Protein_583 type IV pilin protein -
  Aba7804_RS03070 (Aba7804_03065) pilE 643878..644303 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=237927 Aba7804_RS03055 WP_000149374.1 638704..639522(+) (pilX) [Acinetobacter baumannii strain 7804]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=237927 Aba7804_RS03055 WP_000149374.1 638704..639522(+) (pilX) [Acinetobacter baumannii strain 7804]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment