Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I3O_RS16660 Genome accession   NZ_CP028117
Coordinates   3116020..3116757 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O111 str. RM9322     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3111020..3121757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3O_RS16645 (I3O_16640) clpC 3111474..3114047 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I3O_RS16650 (I3O_16645) yfiH 3114177..3114908 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  I3O_RS16655 (I3O_16650) rluD 3114905..3115885 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I3O_RS16660 (I3O_16655) comL 3116020..3116757 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I3O_RS16670 (I3O_16665) raiA 3117028..3117369 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I3O_RS16675 (I3O_16670) pheL 3117473..3117520 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I3O_RS16680 (I3O_16675) pheA 3117619..3118779 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  I3O_RS16685 (I3O_16680) tyrA 3118822..3119943 (-) 1122 WP_000225214.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I3O_RS16690 (I3O_16685) aroF 3119954..3121024 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I3O_RS16695 (I3O_16690) yfiL 3121234..3121599 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=237904 I3O_RS16660 WP_000197686.1 3116020..3116757(+) (comL) [Escherichia coli O111 str. RM9322]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=237904 I3O_RS16660 WP_000197686.1 3116020..3116757(+) (comL) [Escherichia coli O111 str. RM9322]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376