Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   BG910_RS11525 Genome accession   NZ_CP022278
Coordinates   2386081..2389698 (-) Length   1205 a.a.
NCBI ID   WP_089036966.1    Uniprot ID   -
Organism   Neisseria chenwenguii strain 10023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381081..2394698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS11505 (BG910_11495) dsbD 2381669..2383489 (+) 1821 WP_089037260.1 protein-disulfide reductase DsbD -
  BG910_RS11510 (BG910_11500) glyA 2383664..2384914 (-) 1251 WP_089036963.1 serine hydroxymethyltransferase -
  BG910_RS11515 (BG910_11505) - 2385076..2385432 (-) 357 WP_089036964.1 hypothetical protein -
  BG910_RS11520 (BG910_11510) - 2385594..2385812 (+) 219 WP_089036965.1 YdcH family protein -
  BG910_RS11525 (BG910_11515) recB 2386081..2389698 (-) 3618 WP_089036966.1 exodeoxyribonuclease V subunit beta Machinery gene
  BG910_RS11530 (BG910_11520) - 2389854..2390759 (-) 906 WP_089036967.1 Dyp-type peroxidase -
  BG910_RS11535 (BG910_11525) - 2390922..2392019 (+) 1098 WP_089037261.1 metallophosphoesterase -
  BG910_RS11550 (BG910_11540) - 2392845..2393510 (+) 666 WP_089036970.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 1205 a.a.        Molecular weight: 134595.83 Da        Isoelectric Point: 4.8786

>NTDB_id=237864 BG910_RS11525 WP_089036966.1 2386081..2389698(-) (recB) [Neisseria chenwenguii strain 10023]
MTASAQPFRPLTAPIDGTNLIEASAGTGKTYGIAALFARLIVLEQINVESVLVVTFTKAATAELKTRLRARLDDVLQALE
SMEDAEDSDGLDEYCAANHRGDEFLPELLRAALQRESRARLIVRLKAAVGDFDNAAVYTIHGFCQRVLRDYAFLCRAPFD
VELADESRGRLLIPAQDFWRERIVNDPTLAELVFQKRLTPQKMLDTLKSYVGRPYLTFRRPETDLAETRAAVTEKWEKVR
GKLDKLEETFWRIFPTLNGNSYRKTTFTALFAKLKTAAENDALPEFDDKMNMLAADELEGRLKKGQTPDAAAFADLQTVA
DLGRDLEAADKAAEDARIRLHLDLLDYLNAAVEEAKKSRRERNFDDLLLDVHRALTDNPHGTALAEAVAQNWRVALIDEF
QDTDPLQYEIFSRIFAAQNRALFLVGDPKQAIYSFRGADIYAYLQAAKDAARHYTLDVNYRSHAKLINGIGALFQQKNRP
FVLPDITYGKVGAARETGRLKPARPAVQVRWLHESDVDLPAKDALRRRAAEYCADEIAFALAEAASGRLNFKDAPLRSDD
IAVLVRTKNEGRLVADALKTRRIQSVMLHSESVFAEQEAAALAALLQFWLEPRDTEPLRFALTGVLFRYDAGALFALNRD
EAALLAWSDSAAQAAREWQWHGFYAAMQNFAARHGIETRLLSDGNTRSLTNYSQLLELLAEEDAQSHSPQALLQWLNAQI
AEAQNGSVAENKTLRLESDEALVKIVTMHASKGLQYPLVYCPFAWDASGLSEEWAVVHNPNGQTELLAKAQLTGDDQARQ
ADEDLAERLRLLYVALTRAEEQLNIYAACCNDMPANTFAYLLEGSRDADRAAVQEAYQSERNNAEKDQRDQAATAMLKRN
WLRFIENAPADTEFAFIEGEPPAAAVAAASDAPPRLAAAEIPERTFESVRHTSFTGLSRFAKNADSGHEALQPSLEPAET
AVMLSENPSVPSENEADIHHFPRGANAGVCLHEMLEKLDFNRPAAEQQAQTAEILARYGFEEKWLPAVNALLDTCRQTPL
AGGASLADVPAAARLPEMGFTLYTEDFKLGELQKWFRRPDAGLPPECAEAAGMLDFQDVKGFLNGFIDMIFQTSDGLVCI
IDYKSNHLGNDTLAYTQQAMNEAVAHHHYYLQALIYAVAVARYFRERRQPLPKIAVRYLFLRGLDGSENGIWQWDVETED
LARWL

Nucleotide


Download         Length: 3618 bp        

>NTDB_id=237864 BG910_RS11525 WP_089036966.1 2386081..2389698(-) (recB) [Neisseria chenwenguii strain 10023]
ATGACCGCATCCGCCCAACCGTTCCGCCCGCTTACCGCGCCCATCGACGGCACCAACCTTATCGAAGCCTCTGCCGGCAC
AGGCAAGACCTACGGCATTGCCGCGCTGTTTGCGCGCCTGATTGTTTTGGAGCAGATAAACGTCGAAAGCGTCTTGGTCG
TTACCTTTACCAAAGCGGCGACGGCGGAACTGAAAACCCGTCTGCGCGCGCGTTTGGACGATGTTTTGCAGGCGTTGGAA
AGCATGGAAGACGCGGAGGATTCAGACGGCCTCGATGAATATTGCGCGGCAAACCACCGCGGCGATGAATTTCTGCCCGA
GCTTTTACGTGCGGCCTTGCAGCGGGAAAGCCGCGCGCGGCTGATTGTGCGGCTTAAGGCGGCGGTCGGGGATTTCGACA
ATGCGGCGGTTTACACGATACACGGCTTCTGCCAGCGGGTTTTGCGCGATTATGCATTTTTGTGCCGAGCGCCGTTTGAT
GTGGAACTTGCCGACGAAAGCCGCGGGCGTCTGCTGATTCCCGCGCAGGATTTTTGGCGCGAACGGATTGTCAACGACCC
GACTTTGGCGGAACTGGTGTTTCAAAAAAGGCTGACGCCGCAAAAAATGTTGGACACGCTGAAAAGCTACGTCGGCAGGC
CGTATCTGACTTTCAGACGGCCTGAAACGGATTTGGCGGAAACACGTGCGGCGGTGACGGAAAAATGGGAAAAAGTGCGC
GGAAAACTGGATAAATTGGAAGAAACATTTTGGCGGATTTTTCCGACGCTCAACGGCAATTCCTACCGGAAAACGACATT
TACCGCGCTGTTCGCCAAACTCAAAACCGCGGCGGAAAACGACGCACTGCCCGAGTTTGACGACAAAATGAACATGCTGG
CGGCGGACGAATTGGAAGGCCGTCTGAAAAAAGGCCAAACACCCGACGCGGCGGCCTTCGCCGATTTACAGACAGTTGCG
GATTTGGGGCGCGATTTGGAAGCGGCAGACAAAGCGGCGGAAGATGCGCGGATCCGGTTGCATTTGGATTTGCTGGATTA
TTTGAACGCGGCGGTTGAAGAGGCGAAAAAATCCCGCCGCGAACGAAATTTCGACGATTTGCTGCTGGATGTGCACCGCG
CGCTGACCGACAATCCGCATGGCACAGCGCTTGCCGAGGCGGTGGCGCAAAACTGGCGTGTGGCGCTGATTGATGAGTTT
CAAGACACCGACCCGCTGCAATACGAAATTTTCAGCCGCATTTTCGCCGCGCAAAACCGCGCACTGTTTCTCGTCGGCGA
CCCCAAGCAGGCGATTTACAGCTTCCGCGGCGCCGACATTTACGCCTATCTGCAAGCCGCTAAAGATGCGGCGCGGCATT
ACACGCTGGATGTGAACTACCGCAGCCACGCGAAGCTGATCAACGGCATCGGTGCGCTGTTTCAGCAGAAAAACCGCCCG
TTTGTGCTGCCCGACATTACTTACGGCAAAGTCGGCGCGGCGCGGGAAACAGGCCGTCTGAAACCTGCGCGGCCTGCGGT
TCAGGTGCGCTGGCTGCATGAAAGCGACGTCGACCTGCCCGCGAAAGACGCGCTGCGCCGCCGTGCTGCCGAATATTGCG
CCGACGAAATCGCGTTTGCGCTCGCCGAAGCGGCTTCAGGCCGTCTGAATTTTAAAGACGCACCGCTGCGCTCGGATGAC
ATCGCCGTTTTGGTGCGCACCAAAAACGAAGGGCGTTTGGTCGCCGACGCTTTGAAAACGCGGCGGATTCAGAGCGTGAT
GCTGCACAGCGAATCGGTGTTCGCCGAACAAGAAGCTGCCGCCCTCGCCGCGCTGCTGCAATTCTGGCTCGAGCCGCGCG
ATACCGAACCGCTGCGCTTTGCGCTCACAGGCGTGTTGTTCCGCTACGATGCCGGAGCGCTTTTCGCGCTCAACCGCGAC
GAAGCCGCCCTACTCGCTTGGTCGGATTCCGCCGCCCAAGCGGCGCGCGAATGGCAGTGGCACGGCTTTTACGCCGCGAT
GCAGAATTTCGCCGCCCGCCACGGCATCGAAACGCGCCTGCTTTCAGACGGCAACACCCGCAGCCTGACCAATTACAGCC
AGCTTCTCGAGCTTCTGGCCGAAGAAGACGCGCAGAGCCACAGCCCGCAGGCGCTGTTGCAATGGCTCAACGCGCAAATC
GCCGAAGCGCAAAACGGCAGCGTTGCCGAAAACAAAACCCTGCGGCTGGAAAGCGACGAAGCGCTGGTCAAAATCGTTAC
CATGCACGCCTCAAAAGGCTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCATGGGACGCTTCCGGCCTCAGCGAAGAAT
GGGCGGTTGTACACAACCCGAACGGCCAAACCGAGCTGCTCGCCAAAGCCCAGCTTACCGGCGACGACCAAGCCCGACAG
GCCGACGAAGACCTCGCCGAACGCCTGCGCCTGCTCTACGTCGCCCTCACCCGCGCCGAAGAGCAGCTCAACATCTACGC
CGCCTGTTGCAACGACATGCCCGCAAACACCTTCGCCTATCTGCTCGAAGGCAGTCGGGATGCTGATCGGGCGGCAGTTC
AGGAGGCTTATCAGAGTGAACGGAACAATGCAGAAAAAGACCAAAGAGACCAAGCCGCGACGGCGATGCTGAAACGGAAC
TGGCTGCGTTTTATCGAAAACGCGCCCGCCGATACCGAATTTGCTTTTATCGAGGGCGAACCGCCGGCTGCCGCCGTAGC
CGCTGCGAGCGACGCCCCGCCCCGTTTGGCCGCCGCCGAAATTCCCGAGCGCACATTCGAATCCGTGCGCCATACCAGTT
TTACCGGTTTGAGCCGTTTTGCTAAAAACGCCGACAGCGGGCACGAAGCGCTGCAACCCAGCCTCGAACCCGCCGAAACC
GCCGTGATGCTGTCTGAAAATCCGAGCGTGCCGTCTGAAAACGAAGCCGACATCCACCACTTCCCGCGCGGCGCCAATGC
GGGCGTTTGTCTGCACGAAATGCTGGAAAAACTCGATTTCAACCGCCCCGCCGCCGAACAGCAGGCGCAAACCGCCGAAA
TCCTCGCCCGCTACGGTTTTGAAGAAAAATGGCTGCCCGCCGTCAACGCCCTGCTCGACACCTGCCGCCAAACTCCGCTC
GCCGGCGGCGCGTCATTGGCCGACGTCCCCGCTGCCGCGCGCCTGCCTGAAATGGGCTTCACGCTCTACACCGAAGATTT
CAAACTCGGCGAGTTGCAGAAATGGTTCCGCCGCCCCGACGCCGGCCTGCCGCCCGAATGCGCCGAAGCCGCCGGAATGC
TGGATTTTCAAGACGTCAAAGGCTTTCTCAACGGCTTTATCGACATGATTTTCCAAACTTCAGACGGCCTCGTCTGCATC
ATCGACTACAAATCCAACCACCTCGGCAACGACACACTGGCCTATACGCAACAGGCCATGAACGAAGCCGTCGCCCACCA
CCACTACTACCTGCAAGCCCTGATTTACGCCGTCGCCGTCGCCCGCTATTTCCGCGAACGCCGACAGCCCCTGCCCAAAA
TCGCCGTACGCTACCTCTTCCTGCGCGGCCTCGACGGCTCGGAAAACGGGATTTGGCAGTGGGATGTGGAAACTGAGGAT
TTGGCGCGATGGCTATGA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1077-1183)

UvrD-like helicase C-terminal domain (UvrD_C)

(454-826)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.959

100

0.612

Multiple sequence alignment