Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   BG910_RS03980 Genome accession   NZ_CP022278
Coordinates   819786..823052 (+) Length   1088 a.a.
NCBI ID   WP_089035726.1    Uniprot ID   A0A220S0V1
Organism   Neisseria chenwenguii strain 10023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 814786..828052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG910_RS03965 (BG910_03960) - 814803..815345 (-) 543 WP_089035724.1 hypothetical protein -
  BG910_RS03970 (BG910_03965) dxs 815597..817486 (+) 1890 WP_089035725.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BG910_RS03975 (BG910_03970) - 817739..819154 (-) 1416 WP_089037131.1 PepSY domain-containing protein -
  BG910_RS03980 (BG910_03975) recC 819786..823052 (+) 3267 WP_089035726.1 exodeoxyribonuclease V subunit gamma Machinery gene
  BG910_RS03985 (BG910_03980) truA 823197..824021 (-) 825 WP_089035727.1 tRNA pseudouridine(38-40) synthase TruA -
  BG910_RS03990 (BG910_03985) - 824160..825785 (-) 1626 WP_089035728.1 sigma-54 dependent transcriptional regulator -
  BG910_RS03995 (BG910_03990) - 825778..827358 (-) 1581 WP_089035729.1 ATP-binding protein -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 122243.90 Da        Isoelectric Point: 5.4426

>NTDB_id=237842 BG910_RS03980 WP_089035726.1 819786..823052(+) (recC) [Neisseria chenwenguii strain 10023]
MFYLYQSDRLEYLAALFCRIRREQPLAGALRAEEIVVQSQGMRRYLGAFLARETGVAANLKFSLPAGLTWRLMREFIAGI
PALSPFAPEVMRWRLLDLFRSSRFQTASEFAGARSALQGYLNSGGAADYRLAGQLADVFDQYLVYRPQWIDAWQAGKTLD
LGDAEGWQAQLWHYLDDGRQSAPHRVALWETLLSRLSADKLPERFFVFGISTMAPMYLQLLQKLSEHCDVIMLALNPSSR
YWGDVIEPAQILKGADDADLNLSGHPFLASLGKQGRDFFDFLNEIELEESRVFDEDSQPDTLLHRLQHDIRTLAMPSENV
PTNAEKMLGDGSVRVVSAHSPLRELQILKDRILHILAEHPTWQPHDIAVLTPNIEPYSPFIEAVFGQAQAGAQALPYSVS
DVRLSRRQPLFYALEQVLDLLESRFEVDKVLMLLESPPVLARFGLTADDLPLLHDTVAALKVHWGLDKTMRGGSDGLFTW
QQALERLVLGWMLPEGQNPLWHGISAWHGDVNRLDTFARFAAFVRTLADTARLWAQNADTAGWTARARGLVEALFAPDDA
DQYALQQFEQALAQWNQEAALAGFTGELPPPTALRHLRRFLGSESDAGFLRGGITFCSMVPMRSLPFKVLCLLGLNDGNF
PRNTKAAEFDLIARHPQKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRNDAELAPSALLGALIDTVAAMTGTRSRD
LLETWIVQHPLQPFSRRYFIPSETRPHGQISDGLSSTRRDYAAALAQTPESPKAFFRQPLQENQPAAAVGQNELIAFWKN
PVKSWLHQTLGWREPYRDAVWESAEPFEPEAAGTAAAAYLDARRRKQNFDDVAVRLAAESLVPAGELGKLWQARFQADAK
HIDQTLLDGPKHPPHAYELTFVQDFGDQTLQGSLTDVYQRGQILFAEKTPNAPETLAVYLKHLIFCAVRPSESESAQTWL
VLPDQTQHYPEIPQIAARAMLADWLAYYSRGQTRPLPFFAKTCLEAAKKYLKEKTDENKKAAALKAAADAYKGNKINKGQ
GSYTDTALIFGNDETAPYETDLFWELLEKLLLPLLAALQEKEEDGEAV

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=237842 BG910_RS03980 WP_089035726.1 819786..823052(+) (recC) [Neisseria chenwenguii strain 10023]
ATGTTTTACCTCTACCAATCCGACCGCCTTGAATATCTTGCCGCGCTGTTTTGCCGCATCCGCCGAGAGCAGCCGCTGGC
CGGGGCGTTGCGGGCGGAGGAGATTGTGGTGCAGAGCCAGGGGATGCGCCGTTATCTGGGCGCGTTTCTGGCGCGGGAAA
CGGGCGTGGCGGCGAATTTGAAATTCAGTCTGCCGGCAGGGCTGACGTGGCGGCTGATGCGGGAATTTATTGCCGGCATC
CCCGCGCTGAGCCCGTTCGCGCCCGAGGTGATGCGCTGGCGGCTGTTGGATTTGTTCCGCAGCAGCCGTTTTCAGACGGC
CTCGGAGTTTGCCGGTGCGCGCTCGGCGTTGCAGGGTTATCTGAACAGCGGCGGTGCGGCGGATTACCGGCTTGCGGGGC
AGCTTGCGGATGTATTCGACCAGTATTTGGTGTACCGCCCGCAATGGATTGACGCATGGCAGGCGGGAAAAACGCTGGAT
TTGGGCGATGCGGAGGGCTGGCAGGCACAGCTTTGGCATTATTTGGACGACGGCCGCCAATCGGCGCCGCACCGTGTGGC
ACTTTGGGAAACGCTGCTCTCGCGGCTTTCGGCGGACAAGCTGCCCGAGCGGTTTTTTGTGTTCGGCATTTCGACGATGG
CGCCGATGTATTTGCAGCTTTTGCAGAAACTTTCCGAACATTGCGATGTGATCATGCTTGCGCTCAATCCGAGCAGCCGC
TATTGGGGCGATGTGATTGAGCCGGCGCAGATTCTGAAAGGCGCGGACGACGCGGATTTGAACTTGAGCGGGCATCCGTT
TCTGGCTTCGCTGGGCAAACAGGGGCGCGATTTTTTTGATTTTTTAAACGAAATCGAGCTGGAAGAAAGCCGCGTGTTCG
ACGAAGACTCGCAGCCCGATACGCTGCTGCACCGGCTTCAGCACGACATCCGCACGCTGGCAATGCCGTCTGAAAATGTA
CCGACAAACGCGGAAAAAATGCTCGGCGACGGCTCGGTCCGCGTGGTTTCGGCGCACAGCCCGCTGCGCGAATTGCAGAT
TTTGAAAGACCGGATTTTGCACATTCTGGCCGAACACCCGACTTGGCAGCCGCACGATATTGCTGTGTTAACACCGAATA
TCGAGCCGTACAGCCCGTTTATCGAGGCCGTGTTCGGGCAGGCGCAGGCGGGCGCGCAGGCTTTGCCGTATTCGGTTTCC
GACGTGCGCCTCAGCCGCCGCCAGCCGCTGTTTTATGCGTTGGAACAGGTTTTGGATCTGCTCGAAAGCCGTTTTGAAGT
CGATAAGGTATTGATGTTGTTGGAAAGTCCGCCCGTATTGGCGCGCTTCGGGCTGACCGCCGACGATTTGCCTCTGCTGC
ACGACACCGTCGCCGCGCTCAAAGTGCATTGGGGTTTGGACAAAACCATGCGCGGCGGTTCAGACGGCCTCTTCACTTGG
CAGCAGGCGCTGGAGCGGCTGGTATTGGGCTGGATGCTGCCCGAGGGACAAAATCCGCTTTGGCACGGGATCAGCGCATG
GCACGGCGACGTCAACCGTTTGGACACCTTCGCCCGCTTCGCCGCCTTCGTGCGCACGCTCGCCGACACCGCGCGGCTTT
GGGCGCAAAATGCCGATACCGCCGGCTGGACGGCGCGCGCGCGCGGTTTGGTCGAAGCCCTCTTCGCACCCGACGACGCC
GACCAATACGCGCTTCAGCAGTTTGAACAGGCGCTTGCGCAATGGAATCAGGAAGCTGCGCTGGCCGGGTTTACGGGCGA
ACTGCCGCCGCCGACCGCCCTGCGCCACCTGCGCCGTTTTCTCGGTAGCGAAAGCGACGCGGGCTTCCTGCGCGGCGGCA
TCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAAGTCTTGTGTTTATTGGGTTTGAACGACGGCAATTTC
CCGCGCAACACCAAAGCCGCCGAATTCGACCTCATCGCCCGCCACCCGCAAAAAGGTGACCGCGCCCGCCGCGACGACGA
CCGCTACCTCTTCCTCGAAGCCCTTATCAGCGCCCGCGAAATCCTCTACCTTTCCTACATCGGCCGCGACATCCGCAACG
ATGCCGAACTCGCGCCGTCCGCACTTTTGGGCGCGCTCATCGACACCGTCGCCGCCATGACCGGCACGCGCAGCCGCGAT
TTGCTCGAAACCTGGATTGTGCAACACCCCTTGCAACCGTTTTCCCGCCGCTACTTCATACCGTCTGAAACCCGGCCGCA
CGGGCAGATTTCAGACGGCCTCAGTTCCACCCGCCGCGACTACGCCGCCGCCCTCGCGCAAACGCCCGAAAGCCCGAAAG
CCTTTTTCAGACAGCCTTTGCAGGAAAACCAACCCGCCGCCGCAGTCGGCCAAAACGAGCTGATCGCGTTTTGGAAAAAC
CCCGTCAAAAGCTGGTTGCACCAGACCCTCGGCTGGCGCGAACCCTACCGCGACGCCGTGTGGGAATCCGCCGAACCCTT
CGAACCCGAAGCCGCCGGCACCGCCGCAGCCGCCTACCTCGACGCCCGCCGCCGCAAACAAAACTTCGATGACGTCGCCG
TCCGCCTCGCCGCCGAAAGCCTGGTGCCCGCCGGCGAATTGGGCAAACTCTGGCAGGCGCGTTTCCAAGCTGATGCCAAA
CACATCGACCAAACCCTGCTCGACGGCCCCAAACACCCGCCGCACGCCTACGAATTAACGTTCGTCCAAGATTTCGGCGA
CCAAACCCTGCAAGGCAGCCTCACCGACGTGTACCAACGCGGGCAAATCCTGTTTGCCGAAAAAACACCAAACGCCCCCG
AAACCCTCGCCGTTTACCTCAAACACCTGATTTTCTGCGCCGTCAGGCCGTCTGAAAGCGAAAGCGCCCAAACCTGGCTG
GTTTTGCCCGACCAAACGCAGCACTACCCCGAAATCCCGCAAATCGCCGCCCGCGCCATGCTGGCAGACTGGCTGGCATA
CTACAGCCGCGGCCAAACCCGCCCCCTGCCCTTCTTCGCCAAAACCTGCCTTGAGGCCGCAAAAAAATATCTGAAAGAAA
AAACAGACGAAAACAAAAAAGCCGCCGCCCTCAAAGCCGCCGCCGATGCCTACAAAGGCAACAAAATAAACAAGGGGCAA
GGCAGCTACACCGACACTGCGCTCATCTTCGGCAACGACGAAACCGCGCCGTATGAAACGGATTTGTTTTGGGAGTTATT
GGAAAAACTGCTGCTACCGCTGCTGGCGGCGTTGCAGGAGAAGGAAGAAGACGGAGAGGCCGTCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(788-1009)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220S0V1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.949

99.908

0.649

Multiple sequence alignment