Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   CFE88_RS06220 Genome accession   NZ_CP022247
Coordinates   1243852..1244427 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain AMT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238852..1249427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE88_RS06165 (CFE88_06170) - 1238995..1239210 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  CFE88_RS13310 - 1239313..1239429 (+) 117 WP_350481929.1 SAR1012 family small protein -
  CFE88_RS06175 (CFE88_06180) - 1239862..1240020 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  CFE88_RS06180 (CFE88_06185) - 1240090..1240707 (-) 618 WP_002458044.1 LysE/ArgO family amino acid transporter -
  CFE88_RS06185 (CFE88_06190) - 1240711..1241658 (-) 948 WP_002446126.1 fatty acid desaturase family protein -
  CFE88_RS06190 (CFE88_06195) - 1241883..1242104 (-) 222 WP_002446125.1 hypothetical protein -
  CFE88_RS13315 mobV 1242323..1242780 (-) 458 Protein_1159 MobV family relaxase -
  CFE88_RS06220 (CFE88_06225) comK/comK1 1243852..1244427 (-) 576 WP_001829272.1 competence protein ComK Regulator
  CFE88_RS06225 (CFE88_06230) - 1244642..1244860 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  CFE88_RS06230 (CFE88_06235) - 1244938..1245924 (-) 987 WP_002446122.1 lipoate--protein ligase -
  CFE88_RS06235 (CFE88_06240) - 1246129..1246314 (+) 186 WP_001829339.1 YkvS family protein -
  CFE88_RS06240 (CFE88_06245) - 1246320..1246922 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  CFE88_RS06245 (CFE88_06250) - 1247025..1248530 (-) 1506 WP_002458038.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=237715 CFE88_RS06220 WP_001829272.1 1243852..1244427(-) (comK/comK1) [Staphylococcus epidermidis strain AMT]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=237715 CFE88_RS06220 WP_001829272.1 1243852..1244427(-) (comK/comK1) [Staphylococcus epidermidis strain AMT]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment