Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFE88_RS01290 Genome accession   NZ_CP022247
Coordinates   236912..237307 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain AMT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231912..242307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE88_RS01265 (CFE88_01265) - 233331..233735 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  CFE88_RS01270 (CFE88_01270) - 233884..234117 (+) 234 WP_002495678.1 DUF1146 family protein -
  CFE88_RS01275 (CFE88_01275) murA 234227..235492 (+) 1266 WP_002447780.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CFE88_RS01280 (CFE88_01280) fabZ 235526..235963 (+) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CFE88_RS01285 (CFE88_01285) - 236281..236721 (-) 441 WP_002458706.1 YwpF-like family protein -
  CFE88_RS01290 (CFE88_01290) ssb 236912..237307 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  CFE88_RS01295 (CFE88_01295) - 237695..238354 (+) 660 WP_002447776.1 transglycosylase family protein -
  CFE88_RS01300 (CFE88_01300) tenA 238638..239327 (+) 690 WP_002447775.1 thiaminase II -
  CFE88_RS01305 (CFE88_01305) thiD 239320..240141 (+) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CFE88_RS01310 (CFE88_01310) thiM 240134..240922 (+) 789 WP_002475462.1 hydroxyethylthiazole kinase -
  CFE88_RS01315 (CFE88_01315) thiE 240928..241566 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=237696 CFE88_RS01290 WP_002447777.1 236912..237307(+) (ssb) [Staphylococcus epidermidis strain AMT]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=237696 CFE88_RS01290 WP_002447777.1 236912..237307(+) (ssb) [Staphylococcus epidermidis strain AMT]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment