Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   CFE53_RS02385 Genome accession   NZ_CP022242
Coordinates   504970..505857 (+) Length   295 a.a.
NCBI ID   WP_148120307.1    Uniprot ID   -
Organism   Methanofervidicoccus sp. A16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 499970..510857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE53_RS02370 (CFE53_02355) - 500254..501252 (+) 999 WP_148120304.1 transcription initiation factor IIB -
  CFE53_RS02375 (CFE53_02360) - 501506..503650 (+) 2145 WP_148120305.1 ATPase, T2SS/T4P/T4SS family -
  CFE53_RS02380 (CFE53_02365) - 503835..504965 (+) 1131 WP_148120306.1 type II secretion system F family protein -
  CFE53_RS02385 (CFE53_02370) epdJ 504970..505857 (+) 888 WP_148120307.1 type II secretion system F family protein Machinery gene
  CFE53_RS02390 (CFE53_02375) - 505789..506460 (-) 672 WP_148120308.1 TIGR00295 family protein -
  CFE53_RS02395 (CFE53_02380) cbiD 506703..507827 (-) 1125 WP_148120309.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD -
  CFE53_RS02400 (CFE53_02385) - 508712..510055 (+) 1344 WP_148120310.1 AIR synthase-related protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32861.63 Da        Isoelectric Point: 9.4237

>NTDB_id=237689 CFE53_RS02385 WP_148120307.1 504970..505857(+) (epdJ) [Methanofervidicoccus sp. A16]
MISLQDLYLYTIRRNIILLKECGIRISERAYLITIALSAVIPILLKYFLNLTLKSFIILLIMYSLSVFVLPRIIYDIKIE
RFERNLPKALYVMVLALESGRSVVDAINEVIESNIKEVDIVFLKIVKLITDKKLSFEDAVLLVSTSMDSKIFRLLGRLLI
ENRKYGGELAKTLATLAKTLEDLENLRTQLLSVTANGLAVGLIILCGVVPATAGIIGGYLNITAALLPNGTPVTPQEIAK
CMEIIQIGTGIFGFLFTIPLFGLKFSRMVVGSTLCMTFGMLSFYVTLNMTKFLFT

Nucleotide


Download         Length: 888 bp        

>NTDB_id=237689 CFE53_RS02385 WP_148120307.1 504970..505857(+) (epdJ) [Methanofervidicoccus sp. A16]
ATGATAAGTCTTCAAGACTTATATTTGTACACAATCAGACGTAATATTATTTTGTTAAAGGAATGTGGTATCAGGATAAG
CGAGAGAGCATATCTAATAACTATAGCACTCTCTGCAGTAATACCTATTCTGTTGAAATACTTCTTAAATCTTACTTTAA
AAAGTTTCATCATACTACTTATAATGTACTCTCTCTCTGTATTTGTACTTCCTAGGATTATCTACGATATAAAAATAGAG
AGATTTGAGCGTAATTTACCTAAGGCTCTCTATGTAATGGTATTGGCGTTAGAATCTGGACGTTCAGTAGTAGATGCCAT
CAATGAAGTTATCGAGAGTAATATAAAAGAGGTTGATATAGTCTTTTTAAAAATAGTTAAGTTGATCACCGATAAAAAAT
TAAGTTTTGAAGATGCTGTACTTTTAGTTTCAACAAGTATGGATTCAAAGATATTTAGATTACTTGGGAGGTTACTTATT
GAAAATAGGAAATATGGAGGAGAGTTAGCAAAAACTTTAGCTACTCTTGCAAAAACTCTAGAAGACTTGGAAAATCTAAG
AACACAGTTGTTAAGTGTTACTGCAAACGGTCTTGCAGTAGGATTAATAATACTCTGTGGAGTTGTTCCTGCAACTGCAG
GTATCATTGGTGGTTATCTAAACATAACTGCAGCATTACTACCTAATGGAACTCCTGTAACACCGCAAGAGATAGCAAAA
TGTATGGAGATTATCCAAATAGGCACAGGAATATTTGGATTTTTGTTTACTATTCCCCTTTTCGGTTTAAAGTTTAGTAG
AATGGTAGTAGGTAGTACCCTATGTATGACCTTTGGTATGTTGTCTTTCTACGTTACACTCAATATGACGAAGTTTCTCT
TCACCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(91-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

58.419

98.644

0.576

Multiple sequence alignment