Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   CFE53_RS01055 Genome accession   NZ_CP022242
Coordinates   233571..233795 (+) Length   74 a.a.
NCBI ID   WP_148120045.1    Uniprot ID   -
Organism   Methanofervidicoccus sp. A16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 228571..238795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE53_RS01030 (CFE53_01015) - 228872..229114 (+) 243 WP_148120040.1 hypothetical protein -
  CFE53_RS01035 (CFE53_01020) - 229104..229700 (-) 597 WP_148120041.1 hypothetical protein -
  CFE53_RS01040 (CFE53_01025) - 229764..231083 (-) 1320 WP_148120042.1 DUF58 domain-containing protein -
  CFE53_RS01045 (CFE53_01030) - 231107..232036 (-) 930 WP_148120043.1 MoxR family ATPase -
  CFE53_RS01050 (CFE53_01035) - 232046..233035 (-) 990 WP_148120044.1 DUF4350 domain-containing protein -
  CFE53_RS01055 (CFE53_01040) MMJJ_RS05685 233571..233795 (+) 225 WP_148120045.1 class III signal peptide-containing protein Machinery gene
  CFE53_RS01060 (CFE53_01045) - 233848..234066 (+) 219 WP_148120046.1 class III signal peptide-containing protein -
  CFE53_RS01065 (CFE53_01050) - 234105..235121 (-) 1017 WP_148120047.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  CFE53_RS01070 (CFE53_01055) cdhD 236504..237694 (+) 1191 WP_148120048.1 CO dehydrogenase/acetyl-CoA synthase subunit delta -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 7823.02 Da        Isoelectric Point: 6.2165

>NTDB_id=237688 CFE53_RS01055 WP_148120045.1 233571..233795(+) (MMJJ_RS05685) [Methanofervidicoccus sp. A16]
MIIEKLISKRGQISMELGILVAAAVAVAAIAAYYYVKSVSDSAGAAEDNATQTINELGRLAENATGRLRQITLQ

Nucleotide


Download         Length: 225 bp        

>NTDB_id=237688 CFE53_RS01055 WP_148120045.1 233571..233795(+) (MMJJ_RS05685) [Methanofervidicoccus sp. A16]
ATGATAATAGAAAAATTAATATCTAAAAGAGGACAAATATCCATGGAGTTAGGTATATTAGTTGCTGCCGCTGTTGCTGT
TGCTGCAATTGCTGCGTATTACTATGTAAAGAGTGTTAGTGATAGTGCAGGTGCAGCAGAAGATAATGCTACTCAGACAA
TAAATGAGTTAGGAAGGTTAGCAGAAAATGCTACAGGTAGATTAAGACAAATTACTCTTCAATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

51.389

97.297

0.5
  epdE Methanococcus maripaludis strain DSM 2067

50.746

90.541

0.459

Multiple sequence alignment