Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I3S_RS19450 Genome accession   NZ_CP028110
Coordinates   3667473..3668210 (-) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli O121 str. RM8352     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3662473..3673210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3S_RS19415 (I3S_19400) yfiL 3662632..3662997 (-) 366 WP_001370532.1 DUF2799 domain-containing protein -
  I3S_RS19420 (I3S_19405) aroF 3663206..3664276 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I3S_RS19425 (I3S_19410) tyrA 3664287..3665408 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I3S_RS19430 (I3S_19415) pheA 3665451..3666611 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  I3S_RS19435 (I3S_19420) pheL 3666710..3666757 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I3S_RS19440 (I3S_19425) raiA 3666861..3667202 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I3S_RS19450 (I3S_19435) comL 3667473..3668210 (-) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  I3S_RS19455 (I3S_19440) rluD 3668345..3669325 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I3S_RS19460 (I3S_19445) yfiH 3669322..3670053 (+) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  I3S_RS19465 (I3S_19450) clpC 3670183..3672756 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=237684 I3S_RS19450 WP_000197674.1 3667473..3668210(-) (comL) [Escherichia coli O121 str. RM8352]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=237684 I3S_RS19450 WP_000197674.1 3667473..3668210(-) (comL) [Escherichia coli O121 str. RM8352]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376