Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CEW83_RS10640 | Genome accession | NZ_CP022187 |
| Coordinates | 2340256..2341494 (+) | Length | 412 a.a. |
| NCBI ID | WP_108949319.1 | Uniprot ID | A0A2U8GR09 |
| Organism | Parazoarcus communis strain TSPY31 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2335256..2346494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEW83_RS10625 (CEW83_10615) | - | 2336192..2337022 (+) | 831 | WP_108949316.1 | cytochrome C assembly family protein | - |
| CEW83_RS10630 (CEW83_10620) | - | 2337185..2338378 (+) | 1194 | WP_234418772.1 | HlyC/CorC family transporter | - |
| CEW83_RS10635 (CEW83_10625) | pilB | 2338518..2340230 (+) | 1713 | WP_108949318.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CEW83_RS10640 (CEW83_10630) | pilC | 2340256..2341494 (+) | 1239 | WP_108949319.1 | type II secretion system F family protein | Machinery gene |
| CEW83_RS10645 (CEW83_10635) | pilD | 2341546..2342397 (+) | 852 | WP_108949320.1 | prepilin peptidase | Machinery gene |
| CEW83_RS10650 (CEW83_10640) | - | 2342611..2342892 (+) | 282 | WP_108949321.1 | FmdB family zinc ribbon protein | - |
| CEW83_RS10655 (CEW83_10645) | - | 2342917..2343543 (+) | 627 | WP_108949322.1 | DUF502 domain-containing protein | - |
| CEW83_RS10660 (CEW83_10650) | aspS | 2343603..2345402 (+) | 1800 | WP_108949323.1 | aspartate--tRNA ligase | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 44593.62 Da Isoelectric Point: 9.9104
>NTDB_id=237463 CEW83_RS10640 WP_108949319.1 2340256..2341494(+) (pilC) [Parazoarcus communis strain TSPY31]
MATASRTAKRRVSVGPKEELYNWEGKDKTGKIIRGEMRATGDAIVQATLRRQGVLVTKVKKQKMSRGHKITEKDIALFTR
QLATMMKSGVPLLQAFEIGIKGSGNPSLARMLNEVRTDVETGSSLSQAFSRHPVHFDKLFCNLVAAGEQAGILDNLLDRI
ATYKEKILAIKSKIKSALFYPLAVIVVAALVVAVIMLFVVPEFKNVFASFGAELPGPTLIVIAMSDFFVDFWYLVFGIIA
GTIMSIAFLYRRSSAMQIAVDRLVLKLPVVGDIILKATVARWSRTLSTMFAAGVPLVEALESVGGAAGNYVYLTATKAIQ
NEVSTGTSLTVAMQNSNVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSTLLEPIIMVFLGVVIGGLVVA
MYLPIFKLGAVV
MATASRTAKRRVSVGPKEELYNWEGKDKTGKIIRGEMRATGDAIVQATLRRQGVLVTKVKKQKMSRGHKITEKDIALFTR
QLATMMKSGVPLLQAFEIGIKGSGNPSLARMLNEVRTDVETGSSLSQAFSRHPVHFDKLFCNLVAAGEQAGILDNLLDRI
ATYKEKILAIKSKIKSALFYPLAVIVVAALVVAVIMLFVVPEFKNVFASFGAELPGPTLIVIAMSDFFVDFWYLVFGIIA
GTIMSIAFLYRRSSAMQIAVDRLVLKLPVVGDIILKATVARWSRTLSTMFAAGVPLVEALESVGGAAGNYVYLTATKAIQ
NEVSTGTSLTVAMQNSNVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSTLLEPIIMVFLGVVIGGLVVA
MYLPIFKLGAVV
Nucleotide
Download Length: 1239 bp
>NTDB_id=237463 CEW83_RS10640 WP_108949319.1 2340256..2341494(+) (pilC) [Parazoarcus communis strain TSPY31]
ATGGCGACTGCATCCCGAACTGCCAAACGCCGCGTGAGCGTCGGGCCGAAGGAAGAGTTGTACAACTGGGAAGGCAAGGA
CAAGACCGGAAAGATCATCCGCGGCGAGATGCGCGCCACGGGCGACGCCATCGTTCAGGCAACCCTGCGCCGCCAGGGGG
TGCTGGTCACCAAGGTCAAGAAGCAGAAGATGTCCCGTGGCCACAAGATCACGGAAAAGGATATCGCCCTGTTTACCCGC
CAGCTGGCCACAATGATGAAGTCTGGCGTGCCGCTGCTGCAGGCGTTCGAGATTGGTATCAAGGGCTCGGGCAACCCCAG
TCTGGCGCGAATGCTGAACGAGGTCCGCACGGACGTCGAAACGGGCTCTAGCCTGTCGCAGGCTTTTAGCAGACATCCGG
TTCACTTCGACAAGCTTTTTTGCAACCTGGTAGCGGCTGGCGAACAGGCAGGCATCCTGGACAACCTGCTCGACCGCATC
GCGACCTACAAGGAAAAAATTCTTGCCATCAAGAGCAAGATCAAGTCTGCACTTTTCTATCCGCTCGCAGTCATCGTTGT
TGCAGCGCTCGTCGTTGCAGTGATCATGCTGTTCGTAGTCCCGGAGTTCAAGAACGTATTTGCGAGTTTTGGAGCAGAGC
TACCCGGCCCGACCCTGATCGTCATCGCAATGTCCGACTTCTTTGTCGACTTCTGGTACCTGGTATTCGGCATCATTGCC
GGCACCATCATGAGCATCGCATTCCTGTACAGGCGTTCTTCGGCAATGCAGATCGCTGTGGACAGGTTGGTGCTCAAACT
CCCAGTGGTGGGAGACATCATCCTGAAAGCCACTGTGGCGCGCTGGTCGAGAACCCTGTCGACCATGTTTGCTGCCGGTG
TGCCTCTGGTCGAAGCACTGGAGTCCGTAGGCGGCGCAGCCGGAAACTATGTCTATCTGACCGCAACCAAGGCGATCCAG
AACGAAGTGAGTACCGGAACGAGTCTCACCGTGGCGATGCAGAACAGCAACGTGTTTCCAACCATGGTGGTACAGATGGT
GTCGATCGGCGAAGAGTCGGGCCAGCTCGACAGCATGTTGTCGAAAGTCGCGGACTTTTTCGAGCAGGAAGTGGACGACG
CTGTTGCAGGCCTGTCCACCCTGCTGGAACCTATCATCATGGTCTTCCTCGGCGTCGTGATCGGCGGCCTGGTGGTTGCC
ATGTACCTGCCGATCTTCAAACTCGGCGCCGTTGTCTGA
ATGGCGACTGCATCCCGAACTGCCAAACGCCGCGTGAGCGTCGGGCCGAAGGAAGAGTTGTACAACTGGGAAGGCAAGGA
CAAGACCGGAAAGATCATCCGCGGCGAGATGCGCGCCACGGGCGACGCCATCGTTCAGGCAACCCTGCGCCGCCAGGGGG
TGCTGGTCACCAAGGTCAAGAAGCAGAAGATGTCCCGTGGCCACAAGATCACGGAAAAGGATATCGCCCTGTTTACCCGC
CAGCTGGCCACAATGATGAAGTCTGGCGTGCCGCTGCTGCAGGCGTTCGAGATTGGTATCAAGGGCTCGGGCAACCCCAG
TCTGGCGCGAATGCTGAACGAGGTCCGCACGGACGTCGAAACGGGCTCTAGCCTGTCGCAGGCTTTTAGCAGACATCCGG
TTCACTTCGACAAGCTTTTTTGCAACCTGGTAGCGGCTGGCGAACAGGCAGGCATCCTGGACAACCTGCTCGACCGCATC
GCGACCTACAAGGAAAAAATTCTTGCCATCAAGAGCAAGATCAAGTCTGCACTTTTCTATCCGCTCGCAGTCATCGTTGT
TGCAGCGCTCGTCGTTGCAGTGATCATGCTGTTCGTAGTCCCGGAGTTCAAGAACGTATTTGCGAGTTTTGGAGCAGAGC
TACCCGGCCCGACCCTGATCGTCATCGCAATGTCCGACTTCTTTGTCGACTTCTGGTACCTGGTATTCGGCATCATTGCC
GGCACCATCATGAGCATCGCATTCCTGTACAGGCGTTCTTCGGCAATGCAGATCGCTGTGGACAGGTTGGTGCTCAAACT
CCCAGTGGTGGGAGACATCATCCTGAAAGCCACTGTGGCGCGCTGGTCGAGAACCCTGTCGACCATGTTTGCTGCCGGTG
TGCCTCTGGTCGAAGCACTGGAGTCCGTAGGCGGCGCAGCCGGAAACTATGTCTATCTGACCGCAACCAAGGCGATCCAG
AACGAAGTGAGTACCGGAACGAGTCTCACCGTGGCGATGCAGAACAGCAACGTGTTTCCAACCATGGTGGTACAGATGGT
GTCGATCGGCGAAGAGTCGGGCCAGCTCGACAGCATGTTGTCGAAAGTCGCGGACTTTTTCGAGCAGGAAGTGGACGACG
CTGTTGCAGGCCTGTCCACCCTGCTGGAACCTATCATCATGGTCTTCCTCGGCGTCGTGATCGGCGGCCTGGTGGTTGCC
ATGTACCTGCCGATCTTCAAACTCGGCGCCGTTGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
52.261 |
96.602 |
0.505 |
| pilC | Pseudomonas stutzeri DSM 10701 |
51.378 |
96.845 |
0.498 |
| pilG | Neisseria gonorrhoeae MS11 |
50.882 |
96.359 |
0.49 |
| pilG | Neisseria meningitidis 44/76-A |
50.378 |
96.359 |
0.485 |
| pilC | Acinetobacter baylyi ADP1 |
47.561 |
99.515 |
0.473 |
| pilC | Acinetobacter baumannii D1279779 |
49.118 |
96.359 |
0.473 |
| pilC | Thermus thermophilus HB27 |
38.849 |
100 |
0.393 |
| pilC | Vibrio cholerae strain A1552 |
40.657 |
96.117 |
0.391 |
| pilC | Vibrio campbellii strain DS40M4 |
39.024 |
99.515 |
0.388 |