Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C7K40_RS00255 Genome accession   NZ_CP027771
Coordinates   33417..34172 (+) Length   251 a.a.
NCBI ID   WP_023612982.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28417..39172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS09775 - 29937..30218 (-) 282 WP_114866002.1 transposase -
  C7K40_RS00245 (C7K40_00240) pcsB 30820..32016 (+) 1197 WP_023612983.1 peptidoglycan hydrolase PcsB -
  C7K40_RS00250 (C7K40_00245) - 32269..33231 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  C7K40_RS00255 (C7K40_00250) recO 33417..34172 (+) 756 WP_023612982.1 DNA repair protein RecO Machinery gene
  C7K40_RS00260 (C7K40_00255) plsX 34275..35282 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  C7K40_RS00265 (C7K40_00260) - 35275..35517 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  C7K40_RS00270 (C7K40_00265) purC 35668..36372 (+) 705 WP_063629571.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29473.94 Da        Isoelectric Point: 6.6937

>NTDB_id=237141 C7K40_RS00255 WP_023612982.1 33417..34172(+) (recO) [Streptococcus pyogenes strain DMG1800716]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHLFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=237141 C7K40_RS00255 WP_023612982.1 33417..34172(+) (recO) [Streptococcus pyogenes strain DMG1800716]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGTACTGATTTA
CCACTTGATTTTTCCCATCTTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment