Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7M85_RS29210 Genome accession   NZ_CP027766
Coordinates   5413348..5414085 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-3342     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5408348..5419085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M85_RS29175 yfiL 5408505..5408870 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C7M85_RS29180 aroF 5409080..5410150 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C7M85_RS29185 tyrA 5410161..5411282 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C7M85_RS29190 pheA 5411325..5412485 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C7M85_RS29195 pheL 5412584..5412631 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C7M85_RS29200 raiA 5412735..5413076 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C7M85_RS29210 comL 5413348..5414085 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C7M85_RS29215 rluD 5414220..5415200 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7M85_RS29220 yfiH 5415197..5415928 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C7M85_RS29225 clpC 5416058..5418631 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=237138 C7M85_RS29210 WP_000197686.1 5413348..5414085(-) (comL) [Escherichia coli strain 2013C-3342]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=237138 C7M85_RS29210 WP_000197686.1 5413348..5414085(-) (comL) [Escherichia coli strain 2013C-3342]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376