Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEW82_RS08185 Genome accession   NZ_CP022130
Coordinates   1787873..1788466 (-) Length   197 a.a.
NCBI ID   WP_050338058.1    Uniprot ID   A0A241RQ54
Organism   Lactiplantibacillus pentosus strain SLC13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1782873..1793466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW82_RS08165 (CEW82_08165) dnaB 1783497..1784927 (-) 1431 WP_088770332.1 replicative DNA helicase -
  CEW82_RS08170 (CEW82_08170) rplI 1784943..1785395 (-) 453 WP_050338056.1 50S ribosomal protein L9 -
  CEW82_RS08175 (CEW82_08175) - 1785409..1787421 (-) 2013 WP_050338057.1 DHH family phosphoesterase -
  CEW82_RS08180 (CEW82_08180) rpsR 1787598..1787834 (-) 237 WP_003637273.1 30S ribosomal protein S18 -
  CEW82_RS08185 (CEW82_08185) ssb 1787873..1788466 (-) 594 WP_050338058.1 single-stranded DNA-binding protein Machinery gene
  CEW82_RS08190 (CEW82_08190) rpsF 1788503..1788802 (-) 300 WP_003637271.1 30S ribosomal protein S6 -
  CEW82_RS08200 (CEW82_08200) gyrA 1789972..1792524 (-) 2553 WP_231125296.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21368.79 Da        Isoelectric Point: 4.7453

>NTDB_id=237102 CEW82_RS08185 WP_050338058.1 1787873..1788466(-) (ssb) [Lactiplantibacillus pentosus strain SLC13]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=237102 CEW82_RS08185 WP_050338058.1 1787873..1788466(-) (ssb) [Lactiplantibacillus pentosus strain SLC13]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCTGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCTGCACCATCAAGCAGTGCGAACAACAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241RQ54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.452

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.315

100

0.543

Multiple sequence alignment