Detailed information NTG0236937

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: LHGZ1_RS10750
• Genome accession: NZ_CP022115
• Coordinates: 2216560..2217351 (-)
• Length: 263 a.a.
• NCBI ID: WP_027823241.1
• Uniprot ID: A0A248LK49
• Organism: Laribacter hongkongensis strain HLGZ1
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2211560..2222351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LHGZ1_RS10720 (LHGZ1_2281)	-	2212162..2213643 (+)	1482	WP_088861125.1	aldehyde dehydrogenase	-
LHGZ1_RS10725 (LHGZ1_2282)	-	2213709..2214044 (+)	336	WP_088861126.1	rhodanese-like domain-containing protein	-
LHGZ1_RS10730 (LHGZ1_2283)	-	2214077..2214382 (+)	306	WP_088861127.1	helix-turn-helix transcriptional regulator	-
LHGZ1_RS10735 (LHGZ1_2284)	-	2214447..2214791 (+)	345	WP_012697686.1	carboxymuconolactone decarboxylase family protein	-
LHGZ1_RS10740 (LHGZ1_2285)	-	2214898..2215740 (+)	843	WP_088861128.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
LHGZ1_RS10745 (LHGZ1_2286)	-	2215753..2216493 (-)	741	WP_088861129.1	YdcF family protein	-
LHGZ1_RS10750 (LHGZ1_2287)	comL	2216560..2217351 (-)	792	WP_027823241.1	outer membrane protein assembly factor BamD	Machinery gene
LHGZ1_RS10755 (LHGZ1_2288)	rluD	2217350..2218399 (+)	1050	WP_012697690.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LHGZ1_RS10760 (LHGZ1_2289)	pgeF	2218404..2219135 (+)	732	WP_088861130.1	peptidoglycan editing factor PgeF	-
LHGZ1_RS10765 (LHGZ1_2290)	-	2219137..2219682 (+)	546	WP_088861131.1	DUF2946 family protein	-
LHGZ1_RS10770 (LHGZ1_2291)	-	2219929..2220138 (+)	210	WP_012697693.1	cold-shock protein	-
LHGZ1_RS10775 (LHGZ1_2292)	-	2220471..2221214 (-)	744	WP_012697694.1	amino acid ABC transporter permease	-
LHGZ1_RS10780 (LHGZ1_2293)	-	2221287..2222102 (-)	816	WP_088861132.1	basic amino acid ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 30398.49 Da
• Isoelectric Point: 7.9674

>NTDB_id=236937 LHGZ1_RS10750 WP_027823241.1 2216560..2217351(-) (comL) [Laribacter hongkongensis strain HLGZ1]
MKKIAVMMLMAAWLAGCSTTSEPADETRGWTVEKLYSEARDELNSGNYTRAIKLYETLEARYPYGRYAQQAQMDLAYAHF
KDQEPALSLAAADRFIKLHPAHPNVDYVYYLKGLVNYNEDGGILSKYTGQDRAERDPKAAREAFTSFRDLVVRFPDSKYA
PDARVKMQNLVDGLAEHELFVARYYMRRSAYLAAANRAQGMIKEFPDSPFVEESFAIMVTAYDKLGKTTLRDDTRRVLET
NFPNSVYLKKPWQPRDVPWYQFW

Nucleotide

• Length: 792 bp

>NTDB_id=236937 LHGZ1_RS10750 WP_027823241.1 2216560..2217351(-) (comL) [Laribacter hongkongensis strain HLGZ1]
ATGAAAAAAATCGCGGTAATGATGCTGATGGCGGCCTGGCTTGCCGGGTGTTCGACCACCTCCGAGCCAGCGGACGAGAC
GCGCGGCTGGACAGTCGAAAAACTCTATTCCGAGGCGCGCGACGAGCTGAATAGTGGAAATTATACGCGGGCGATCAAGC
TCTACGAAACGCTCGAAGCGCGTTATCCGTATGGCCGTTATGCCCAGCAGGCGCAGATGGACCTCGCCTACGCGCACTTC
AAGGACCAGGAACCGGCCTTGTCGCTGGCCGCTGCCGACCGCTTCATCAAGCTGCACCCGGCGCACCCGAACGTTGACTA
CGTCTACTATCTCAAGGGACTGGTCAACTACAACGAAGACGGCGGCATCCTGTCCAAATACACTGGCCAGGACCGGGCCG
AGCGTGATCCCAAGGCCGCGCGCGAGGCCTTTACCTCTTTCCGTGATCTGGTCGTGCGCTTCCCGGACAGCAAGTATGCC
CCGGATGCCCGGGTGAAAATGCAGAACCTCGTCGATGGCCTGGCCGAACACGAGCTCTTCGTCGCGCGCTATTACATGCG
CCGCAGCGCCTATCTGGCAGCCGCAAACCGTGCCCAGGGCATGATCAAGGAATTCCCGGATTCGCCGTTTGTCGAAGAAT
CCTTCGCCATCATGGTGACGGCCTACGACAAGCTCGGCAAAACCACCCTGCGCGACGATACCCGCCGGGTGCTGGAAACC
AACTTCCCCAACAGCGTCTACCTGAAAAAGCCGTGGCAGCCGCGTGACGTGCCGTGGTACCAGTTCTGGTAA

Domains

Predicted by InterproScan.

• Outer membrane lipoprotein (YfiO) (32-234)

3D structure

• AlphaFold DB: A0A248LK49

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria meningitidis MC58	55.639	100	0.563
comL	Neisseria gonorrhoeae MS11	54.511	100	0.551