Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C7A17_RS01510 Genome accession   NZ_CP027657
Coordinates   301936..302619 (-) Length   227 a.a.
NCBI ID   WP_106736342.1    Uniprot ID   A0A7G5DIZ3
Organism   Ectopseudomonas mendocina strain NEB698     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296936..307619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS01480 (C7A17_01480) murB 298056..299075 (-) 1020 WP_106736337.1 UDP-N-acetylmuramate dehydrogenase -
  C7A17_RS01485 (C7A17_01485) - 299072..299536 (-) 465 WP_106736338.1 low molecular weight protein-tyrosine-phosphatase -
  C7A17_RS01490 (C7A17_01490) kdsB 299536..300300 (-) 765 WP_106736339.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C7A17_RS01495 (C7A17_01495) - 300301..300486 (-) 186 WP_013714804.1 Trm112 family protein -
  C7A17_RS01500 (C7A17_01500) lpxK 300506..301510 (-) 1005 WP_106736340.1 tetraacyldisaccharide 4'-kinase -
  C7A17_RS01505 (C7A17_01505) - 301511..301939 (-) 429 WP_106736341.1 biopolymer transporter ExbD -
  C7A17_RS01510 (C7A17_01510) exbB 301936..302619 (-) 684 WP_106736342.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C7A17_RS01515 (C7A17_01515) comA 302690..304912 (-) 2223 WP_106736343.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C7A17_RS01520 (C7A17_01520) - 304987..306231 (-) 1245 WP_106736344.1 lipoprotein-releasing ABC transporter permease subunit -
  C7A17_RS01525 (C7A17_01525) lolD 306231..306932 (-) 702 WP_106736345.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24449.86 Da        Isoelectric Point: 9.6509

>NTDB_id=236892 C7A17_RS01510 WP_106736342.1 301936..302619(-) (exbB) [Ectopseudomonas mendocina strain NEB698]
MWELVKSGGWVMLPIILCSIAAAGIIAERLWTLRPSRVAPANLLAQVWQWIKDKKLNNQKLKELRGHSPLGQILAAGLAN
SKHGREVMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLAMIDIFGAFMGTTGGANTQMLAGGIAKALITTA
TGLIVAIPALFFHRFLTRRVDELVVGMEQEAIKLVEMLQGDREVDMSDAPAPAATAEKPGRKEGRKA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=236892 C7A17_RS01510 WP_106736342.1 301936..302619(-) (exbB) [Ectopseudomonas mendocina strain NEB698]
GTGTGGGAACTGGTCAAGTCCGGCGGCTGGGTGATGCTGCCGATCATTCTCTGCTCCATCGCTGCTGCCGGCATCATTGC
CGAGCGCCTGTGGACCCTGCGTCCTTCCCGTGTCGCCCCGGCCAACCTGCTGGCCCAGGTGTGGCAGTGGATCAAGGACA
AGAAGCTGAACAACCAGAAGCTCAAGGAACTGCGTGGGCATTCGCCGCTCGGTCAGATCCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCCGCCGCTCGTGTCATTCATGATCTTGAGCGCTACCT
CAATGCCCTCGGCACCATTGCCGGTATTGCGCCGCTGCTCGGCTTGCTCGGCACCGTGCTGGCGATGATCGATATTTTCG
GCGCCTTCATGGGCACGACCGGTGGTGCCAATACCCAGATGCTCGCCGGCGGCATTGCCAAGGCGCTGATCACCACAGCA
ACCGGTCTGATCGTGGCGATTCCGGCACTGTTCTTCCATCGTTTCCTCACCCGTCGTGTCGACGAACTGGTGGTGGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAATGCTGCAGGGCGACCGTGAGGTCGATATGAGCGATGCCCCGGCCCCTGCTG
CCACCGCCGAGAAACCGGGTCGCAAGGAAGGACGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G5DIZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

92.952

0.758