Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CEQ50_RS15790 Genome accession   NZ_CP022104
Coordinates   334084..335265 (-) Length   393 a.a.
NCBI ID   WP_017050024.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 329084..340265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS15785 (CEQ50_15830) cqsS 331946..333997 (+) 2052 WP_088733199.1 hybrid sensor histidine kinase/response regulator Regulator
  CEQ50_RS15790 (CEQ50_15835) cqsA 334084..335265 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEQ50_RS15795 (CEQ50_15840) - 335465..336439 (-) 975 WP_013868491.1 TDT family transporter -
  CEQ50_RS15800 (CEQ50_15845) clcA 336588..337985 (-) 1398 WP_088733200.1 H(+)/Cl(-) exchange transporter ClcA -
  CEQ50_RS15805 (CEQ50_15850) - 338477..339463 (+) 987 WP_010320211.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43529.33 Da        Isoelectric Point: 6.6121

>NTDB_id=236845 CEQ50_RS15790 WP_017050024.1 334084..335265(-) (cqsA) [Vibrio anguillarum strain CNEVA NB11008]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=236845 CEQ50_RS15790 WP_017050024.1 334084..335265(-) (cqsA) [Vibrio anguillarum strain CNEVA NB11008]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACACCTAGTCCTGGGGAAAAGGCCAACAAAAAACGATATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGTTGAAAAACGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACTGCCTTGTTGCAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGATT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTACGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTGCAAAAACTAATCGCTCGACACGGCCCAGGGCTCATTGTGGTTGATTCGATTTACAGCACTATAGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGCGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGACACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.734

98.473

0.677

Multiple sequence alignment