Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   DSM101856_RS00580 Genome accession   NZ_CP027639
Coordinates   125609..127507 (-) Length   632 a.a.
NCBI ID   WP_002781963.1    Uniprot ID   A0ABN0EQS1
Organism   Campylobacter coli strain meC0280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 120609..132507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS00550 (DSM101856_00113) map 120638..121396 (+) 759 WP_002778854.1 type I methionyl aminopeptidase -
  DSM101856_RS00555 (DSM101856_00114) - 121719..122219 (-) 501 WP_004284528.1 flagellar FLiS export co-chaperone -
  DSM101856_RS00560 (DSM101856_00115) - 122271..122873 (-) 603 WP_002807495.1 ABC-type transport auxiliary lipoprotein family protein -
  DSM101856_RS00565 (DSM101856_00116) - 122870..123766 (-) 897 WP_052784719.1 MlaD family protein -
  DSM101856_RS00570 (DSM101856_00117) - 123769..124491 (-) 723 WP_002781968.1 ATP-binding cassette domain-containing protein -
  DSM101856_RS00575 (DSM101856_00118) - 124492..125607 (-) 1116 WP_002781966.1 ABC transporter permease -
  DSM101856_RS00580 (DSM101856_00119) recP/tkt 125609..127507 (-) 1899 WP_002781963.1 transketolase Machinery gene
  DSM101856_RS00585 (DSM101856_00120) - 127517..128356 (-) 840 WP_002778862.1 polyprenyl synthetase family protein -
  DSM101856_RS00590 (DSM101856_00121) - 128353..129444 (-) 1092 WP_002778863.1 PDZ domain-containing protein -
  DSM101856_RS00595 (DSM101856_00122) - 129441..129746 (-) 306 WP_002778864.1 YbaB/EbfC family nucleoid-associated protein -
  DSM101856_RS00600 (DSM101856_00123) - 129750..131033 (-) 1284 WP_002783046.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  DSM101856_RS00605 (DSM101856_00124) - 131017..131574 (-) 558 WP_002781959.1 hypothetical protein -
  DSM101856_RS00610 (DSM101856_00125) - 131561..131833 (-) 273 WP_002778869.1 NifU family protein -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69561.23 Da        Isoelectric Point: 5.7186

>NTDB_id=236844 DSM101856_RS00580 WP_002781963.1 125609..127507(-) (recP/tkt) [Campylobacter coli strain meC0280]
MDLSILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSYHLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLDDIKNFRQLHSKTPGHPEISTQGVEIATGPLGQGIANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
YEACSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSIDGHDYEAIDKALKQAKEANKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEKAGFDPNLNFYIPKAAKIRFESAVELGDLEEAKWKDKLEKSEKKELLEKL
LNPDFSKINYPDFKGKDLATRDSNGEILNALAKDLEGFLGGSADLAPSNKTELYGMGDFAEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKVKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANELEKQGFACNVISMP
CFELFEKQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSVPQILNFILDK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=236844 DSM101856_RS00580 WP_002781963.1 125609..127507(-) (recP/tkt) [Campylobacter coli strain meC0280]
ATGGATCTATCGATATTACAAGAACAAGCAAATACTTTAAGATTTTTAAGTGCCGATATGGTGCAAAAGGCTAATTCAGG
CCACCCAGGTGCACCCTTGGGAATGGCTGATATTTTAACGGTTTTAAGTTATCATCTTTCTCATAATCCTAAAAACCCAA
CTTGGCTAAACCGCGATAGGCTTGTGTTTTCAGGCGGACATGCCAGTGCTTTGCTTTATAGCTTTTTGCATTTAAGTGGT
TATGATTTAAGTTTAGATGATATTAAAAATTTCCGCCAACTTCATTCAAAAACTCCAGGCCATCCTGAAATTTCAACTCA
AGGAGTAGAGATTGCTACAGGCCCATTAGGACAAGGTATAGCTAATGCTGTAGGCTTTGCTATGGCAGCTAAAAAAGCTC
AAAACTTACTAGGAAAAGAATTAATCAATCACAAGGTTTATTGTCTTTGTGGAGATGGGGATTTACAAGAGGGAATTTCT
TATGAAGCGTGTTCTTTAGCAGGACTTCATAAACTTGATAATTTAATCATCATCTATGATAGCAATGAAATTTCTATCGA
AGGAGATGTAAGCTTAGCCTTTAATGAAGATGTAAAAATGCGTTTTGAGTCACAAGGCTTTGAAGTTTTAAGTATCGATG
GACACGATTATGAAGCAATTGATAAGGCTCTAAAACAAGCTAAAGAAGCCAACAAACCTTGCCTTATCATCGCAAAAACA
ACCATAGCAAAAGGCGCAGGAGAGCTTGAAGGAAGTCACAAAAGCCACGGCGCACCTTTGGGTGAAGAGGTTATTAAAAA
AGCCAAAGAAAAAGCAGGATTTGATCCAAATTTAAATTTTTATATACCTAAAGCAGCAAAAATTCGCTTCGAAAGTGCTG
TAGAACTTGGAGATTTAGAAGAAGCTAAATGGAAAGATAAGCTCGAAAAATCAGAAAAAAAAGAACTCTTAGAAAAACTT
TTAAATCCTGATTTTAGCAAGATAAATTATCCTGATTTTAAAGGCAAGGATTTAGCTACAAGAGATAGTAATGGAGAAAT
TTTAAATGCTCTAGCTAAAGATTTGGAAGGATTTTTAGGCGGAAGTGCGGACTTAGCCCCATCTAATAAAACCGAACTTT
ATGGAATGGGTGATTTTGCGGAAGGAAAAAATATTCATTTTGGTATCAGAGAACACGCTATGGCTGCGATCAATAATGCC
TTTGCAAGATATGGAATTTTCTTACCTTTTTCAGCAACATTTTTTATCTTTAGCGAATATTTAAAACCCGCAGCTAGGAT
AGCAGCTTTAATGAAAGTCAAACATTTTTTCATTTTCACACATGATAGCATAGGCGTTGGCGAAGATGGACCAACTCATC
AACCTATCGAACAACTCAGCACTTTTAGAGCTATGCCAAATTTCTTAACCTTTAGACCAGCTGATGGAGTGGAAAATGTT
AAAGCTTGGCAAATAGCTTTAAATGCAGATATTCCAAGTGCTTTTGTACTTTCACGCCAAAAGCTTAAGGCTTTAAATGA
ACCTGTTTTTGGTGATGTAAAAAACGGGGCGTATTTACTTAAAGAAAGTAAAGATGCTAAATTTACGCTTTTAGCAAGCG
GAAGTGAGGTTTCTCTTTGCTTAGAAAGTGCAAATGAATTAGAAAAACAAGGCTTTGCTTGTAATGTAATCTCCATGCCT
TGTTTTGAACTCTTTGAAAAGCAAGATAAAGCTTATAAAGATAGGCTTTTACAGGGTGAAGTTATAGGGGTTGAAGCAGC
ACATTCTAATGAGCTTTATAAATTCTGCGATAGGGTTTATGGCATAGAAAGTTTTGGAGAAAGTGGTAAAGATAAAGATG
TATTTGAGCATTTTGGTTTTAGCGTTCCACAAATTTTAAATTTCATTCTCGATAAGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(522-625)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.278

100

0.413

Multiple sequence alignment