Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CEQ50_RS15785 Genome accession   NZ_CP022104
Coordinates   331946..333997 (+) Length   683 a.a.
NCBI ID   WP_088733199.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 326946..338997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS15775 (CEQ50_15820) - 327608..328750 (+) 1143 WP_088733197.1 exonuclease SbcCD subunit D -
  CEQ50_RS15780 (CEQ50_15825) - 328750..331791 (+) 3042 WP_088733198.1 AAA family ATPase -
  CEQ50_RS15785 (CEQ50_15830) cqsS 331946..333997 (+) 2052 WP_088733199.1 hybrid sensor histidine kinase/response regulator Regulator
  CEQ50_RS15790 (CEQ50_15835) cqsA 334084..335265 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEQ50_RS15795 (CEQ50_15840) - 335465..336439 (-) 975 WP_013868491.1 TDT family transporter -
  CEQ50_RS15800 (CEQ50_15845) clcA 336588..337985 (-) 1398 WP_088733200.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78195.59 Da        Isoelectric Point: 5.6150

>NTDB_id=236844 CEQ50_RS15785 WP_088733199.1 331946..333997(+) (cqsS) [Vibrio anguillarum strain CNEVA NB11008]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRAICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALACAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPTPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSSENCHPITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSGLG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETPGYLTKLEPKLHFTQAKVCYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFEAEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=236844 CEQ50_RS15785 WP_088733199.1 331946..333997(+) (cqsS) [Vibrio anguillarum strain CNEVA NB11008]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGGCGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTACTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTTTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTTATGCTGATTCAAGCCGCCATTGCATTAGCATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTTTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTGTCAATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCACTCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTACAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAGTGAGAATTGCCACCCAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGTTGGACGATATTTTTAAAGACTTTTATACTTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGGGATATTATCTGCCGTTCTGGACTTGGA
GAGTGGACGGAGTTTACCTTAACGTTTCCCGAGTATGATTCGCAAGCCGTTGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCTGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGCCGGGTTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGCGTTACGCGTTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGGTCGGCCATTATTGATGAACTACTCTTTGAAGCGGAAGAGCTTATTGCCGATAAGAATGTTATCCCGTTAAAACAA
TACGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTGCGTAGTTTCACCGCTCTGCTGCTAGAAAAGCA
AGGCTATGAAGTGTTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAATTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCACACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment