Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CEQ50_RS05240 Genome accession   NZ_CP022103
Coordinates   1125167..1126573 (+) Length   468 a.a.
NCBI ID   WP_026028245.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120167..1131573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS05235 (CEQ50_05250) uvrB 1122895..1124925 (+) 2031 WP_088733049.1 excinuclease ABC subunit UvrB -
  CEQ50_RS05240 (CEQ50_05255) luxO 1125167..1126573 (+) 1407 WP_026028245.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CEQ50_RS05245 (CEQ50_05260) luxU 1126578..1126916 (+) 339 WP_017048414.1 quorum-sensing phosphorelay protein LuxU -
  CEQ50_RS05250 (CEQ50_05265) - 1126913..1127803 (-) 891 WP_013857260.1 YvcK family protein -
  CEQ50_RS05255 (CEQ50_05270) moaA 1128115..1129104 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  CEQ50_RS05260 (CEQ50_05275) moaB 1129172..1129684 (+) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  CEQ50_RS05265 (CEQ50_05280) moaC 1129695..1130195 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CEQ50_RS05270 (CEQ50_05285) moaD 1130188..1130433 (+) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  CEQ50_RS05275 (CEQ50_05290) moaE 1130436..1130906 (+) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52144.54 Da        Isoelectric Point: 6.0305

>NTDB_id=236823 CEQ50_RS05240 WP_026028245.1 1125167..1126573(+) (luxO) [Vibrio anguillarum strain CNEVA NB11008]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTDTRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=236823 CEQ50_RS05240 WP_026028245.1 1125167..1126573(+) (luxO) [Vibrio anguillarum strain CNEVA NB11008]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATCGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGCTTTATCGGTAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGATACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
ACAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CGATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.832

96.581

0.848
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment