Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM104627_RS03515 Genome accession   NZ_CP027638
Coordinates   704669..705217 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain meC0467     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 699669..710217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS03485 (DSM104627_00710) ctsT 699712..700017 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  DSM104627_RS03490 (DSM104627_00711) proC 700014..700751 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  DSM104627_RS03495 (DSM104627_00712) fliW 700751..701140 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  DSM104627_RS03500 (DSM104627_00713) bamD 701304..701951 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  DSM104627_RS03505 (DSM104627_00714) lon 701967..704342 (+) 2376 WP_002783351.1 endopeptidase La -
  DSM104627_RS03510 (DSM104627_00715) rpsR 704398..704658 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  DSM104627_RS03515 (DSM104627_00716) ssb 704669..705217 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  DSM104627_RS03520 (DSM104627_00717) rpsF 705226..705603 (-) 378 WP_002794143.1 30S ribosomal protein S6 -
  DSM104627_RS03525 (DSM104627_00718) - 705884..707156 (+) 1273 Protein_688 MFS transporter -
  DSM104627_RS03530 (DSM104627_00719) - 707156..708157 (+) 1002 WP_002780256.1 TIM barrel protein -
  DSM104627_RS03535 - 708150..709005 (-) 856 Protein_690 VirK family antimicrobial peptide resistance protein -
  DSM104627_RS03540 (DSM104627_00723) rseP 709002..710105 (-) 1104 WP_002787897.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=236823 DSM104627_RS03515 WP_002777084.1 704669..705217(-) (ssb) [Campylobacter coli strain meC0467]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=236823 DSM104627_RS03515 WP_002777084.1 704669..705217(-) (ssb) [Campylobacter coli strain meC0467]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATTGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment