Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CEJ46_RS09845 Genome accession   NZ_CP022101
Coordinates   2164810..2167965 (-) Length   1051 a.a.
NCBI ID   WP_232471650.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2159810..2172965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS09825 (CEJ46_09825) - 2160768..2161196 (+) 429 WP_064625752.1 HIT family protein -
  CEJ46_RS09830 (CEJ46_09830) - 2161309..2161539 (-) 231 WP_010318896.1 FeoC-like transcriptional regulator -
  CEJ46_RS09835 (CEJ46_09835) feoB 2161536..2163809 (-) 2274 WP_064625753.1 Fe(2+) transporter permease subunit FeoB -
  CEJ46_RS09840 (CEJ46_09840) - 2163809..2164036 (-) 228 WP_013856356.1 FeoA family protein -
  CEJ46_RS09845 (CEJ46_09845) tfoS 2164810..2167965 (-) 3156 WP_232471650.1 AraC family transcriptional regulator Regulator
  CEJ46_RS09850 (CEJ46_09850) znuA 2168345..2169223 (-) 879 WP_064625755.1 zinc ABC transporter substrate-binding protein ZnuA -
  CEJ46_RS09855 (CEJ46_09855) znuC 2169308..2170090 (+) 783 WP_064625756.1 zinc ABC transporter ATP-binding protein ZnuC -
  CEJ46_RS09860 (CEJ46_09860) znuB 2170083..2170862 (+) 780 WP_064625757.1 zinc ABC transporter permease subunit ZnuB -
  CEJ46_RS09865 (CEJ46_09865) sucD 2170940..2171812 (-) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 1051 a.a.        Molecular weight: 120287.77 Da        Isoelectric Point: 6.7739

>NTDB_id=236785 CEJ46_RS09845 WP_232471650.1 2164810..2167965(-) (tfoS) [Vibrio anguillarum strain JLL237]
MVFFDGQNILPRRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYT
YHAQTHKLVTYSFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGT
LNGGLIIDVEDPKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGG
IWIATDKGVRYFSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYLFLTRQGLYQVDAEDWQEPKLIFPGEVHDVAQIDDH
SLWIATHTGIVIYHLQTKKMIETSVLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSEWFVDAFLPAK
IIKLKSTRRGVFIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISP
KCLTETGNGIWLTSSQGISLYNPMGEMVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPP
NTNIIFSQVNVDHIPVMFGRGRFQTLELEYGSSISFLFGALPESRSLSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLL
VRNYSPNPQNSMINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLT
NNQQLRKQLQIRHIVVGQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCV
DGWREEFAKANISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINS
DKRISGFELEEMQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNY
YSDPEFSTSSAAKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFG
LSPTQFVDDNE

Nucleotide


Download         Length: 3156 bp        

>NTDB_id=236785 CEJ46_RS09845 WP_232471650.1 2164810..2167965(-) (tfoS) [Vibrio anguillarum strain JLL237]
GTGGTTTTCTTTGATGGACAAAACATCCTTCCCCGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCT
TAATAACGCTTTTTGGACGTTCATTGATAATGAACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCT
TAACGCCTGGAATCATCATAAAAAAAATAGGTTCGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACA
TACCATGCGCAAACCCACAAGTTAGTTACTTATTCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGT
TAATGATGCGAAGTTTGTGCTTTCTAAATGGGTATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTT
CTCACGTGCTCAGCTCTGGTAAAAACTTCATTGAGAAACTCTATTTTTCCGAGAAACGTAGAGAACTTGTGATTGGAACG
CTCAATGGTGGGCTGATTATTGATGTCGAGGACCCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGT
TGCTGAGACAGATCAAGAGTATTGGATTGGTACTGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCA
AGTTAGAAAGTAATGACCAAGACAATAATGGGTTACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGG
ATTTGGATCGCAACGGATAAAGGTGTTCGTTACTTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCT
CAACAATAATCCCATAACAAAAATTGTGACAAGGTCAGATAATAAAGGCTATTTGTTTTTAACTCGACAAGGGTTATACC
AAGTCGATGCTGAAGATTGGCAAGAGCCTAAACTTATTTTCCCTGGAGAAGTGCATGATGTTGCTCAAATAGATGATCAT
TCTCTATGGATAGCTACACATACAGGCATCGTTATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCGTTTTACC
TCTGAAGCTGCGTTCGAATGATACTAAACACCTTGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATT
TGTGGTCATATCAGTTGGCCGATAACTCGCTAACCGATTTCGGTTCTGAATGGTTTGTTGATGCATTTTTGCCTGCAAAA
ATAATAAAACTTAAGTCAACTCGGCGAGGGGTATTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAAT
TGTTTTTCTCCGAGCGACTAGTCATTATGGACAAAGCATTGATATATTTGAGAGTAGCAAGGGTGATGTTTGGTTTGCTA
GTGCTTATGGCGTCTTTGTTTTGGCACATGATCGTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCC
AAATGTTTAACTGAAACGGGCAACGGTATTTGGCTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGAT
GGTAAAGCATTTTGGTGATCCACACGGATTGATGAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATA
ACCAACAGCAGTTGCTGCTAGGTTCCCGCTTTGGCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCT
AATACAAATATTATCTTTAGCCAAGTGAATGTCGATCACATTCCTGTCATGTTCGGCCGTGGTCGTTTTCAGACACTAGA
ATTGGAATATGGAAGTTCGATAAGCTTTTTATTTGGTGCATTGCCAGAATCGAGATCCTTATCATTGGAGTATCGTATAG
CGGGGGATAAGGAGTGGCAGAGATTAGAAAGTGCTCAGTTGACACTTGATCACCTGTTACCTGGACACTATCGTTTGCTG
GTGAGAAATTACAGTCCAAATCCGCAAAACAGTATGATAAACAGTCTATCATTTATTGTGGATAATCCGTGGTATTGGTC
TTCATGGGCTATTGTTCTTTACCTTTGCCTTTCTATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTA
CCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGGCCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACT
AATAACCAGCAGTTGCGCAAGCAATTACAAATTCGCCATATCGTTGTTGGACAGATGTTAGATTCTATTACTCCTACATT
AAATCAGCTGATTTATCGCTCGCAACTCCATCAACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGG
CGTTACTTCGTAACGTAAGAAATGATAAAACAGCGACTCAGTTGCTCTACGACCTATCGATCATCTTGAACTCTTGTGTG
GACGGATGGCGTGAAGAGTTCGCGAAAGCGAATATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATC
TGCCCATTTTAACCTAGACATCATTTTCAATACGCTACTGTCTGATGCGGTAAAACGTCTTTATAGAAATCAAGAGCTAC
AAATTCATTGTTATGAAAGGGAGAAAAGACTGTTTATTGTGATGATTGACTGTGGCGATCAGGTGCAATCCATCAATAGT
GATAAGCGTATCTCTGGTTTTGAACTAGAGGAGATGCAACTGTTAGTACAGCGTAGTGGTGGGGAAATACATATTTTTTC
ATCGCCAGAACGAAATTTAGTTGAGCTTTCTTGGCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAG
AGGAGCATTCAGAGGACAAGTTTATTGATGTAACGGAAAAAGAGTGGCTTAAAAAAGTAGAAAAATTGGTACACAATTAC
TATTCAGATCCTGAATTTAGTACCTCTAGTGCGGCTAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAA
AGCGATCACCAATAAAACATTCAAAGAGTATCTAAATGAGATCCGACTAGAGAAAGCGTGCCAATATTTGCTTGCAGGAG
GAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGTTTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGT
TTATCGCCAACCCAATTTGTTGATGATAACGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(972-1047)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

48.638

100

0.493

Multiple sequence alignment