Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | DSM104626_RS06210 | Genome accession | NZ_CP027634 |
| Coordinates | 1191432..1191812 (-) | Length | 126 a.a. |
| NCBI ID | WP_002776373.1 | Uniprot ID | A0ABN0ERI9 |
| Organism | Campylobacter coli strain meC0281 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1186432..1196812
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM104626_RS06185 (DSM104626_01238) | aspS | 1186945..1188696 (+) | 1752 | WP_002784258.1 | aspartate--tRNA ligase | - |
| DSM104626_RS06190 (DSM104626_01239) | - | 1188693..1189268 (+) | 576 | WP_002776379.1 | adenylate kinase | - |
| DSM104626_RS06195 (DSM104626_01240) | ppa | 1189278..1189796 (+) | 519 | WP_002776378.1 | inorganic diphosphatase | - |
| DSM104626_RS06200 (DSM104626_01241) | msrA | 1189844..1190344 (+) | 501 | WP_002776375.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| DSM104626_RS06205 (DSM104626_01242) | - | 1190567..1191442 (-) | 876 | WP_002776374.1 | RsmB/NOP family class I SAM-dependent RNA methyltransferase | - |
| DSM104626_RS06210 (DSM104626_01243) | dprB | 1191432..1191812 (-) | 381 | WP_002776373.1 | Holliday junction resolvase RuvX | Machinery gene |
| DSM104626_RS06215 (DSM104626_01244) | dprA | 1191809..1192579 (-) | 771 | WP_002776372.1 | DNA-processing protein DprA | Machinery gene |
| DSM104626_RS06220 (DSM104626_01245) | - | 1192569..1193621 (-) | 1053 | WP_002776371.1 | divergent polysaccharide deacetylase family protein | - |
| DSM104626_RS06225 (DSM104626_01246) | ilvC | 1193624..1194646 (-) | 1023 | WP_002776360.1 | ketol-acid reductoisomerase | - |
| DSM104626_RS06230 (DSM104626_01247) | - | 1194769..1196703 (+) | 1935 | WP_002776352.1 | ribonuclease R family protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13949.38 Da Isoelectric Point: 9.5520
>NTDB_id=236784 DSM104626_RS06210 WP_002776373.1 1191432..1191812(-) (dprB) [Campylobacter coli strain meC0281]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI
Nucleotide
Download Length: 381 bp
>NTDB_id=236784 DSM104626_RS06210 WP_002776373.1 1191432..1191812(-) (dprB) [Campylobacter coli strain meC0281]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
42.063 |
100 |
0.421 |