Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CEJ46_RS08820 Genome accession   NZ_CP022101
Coordinates   1940428..1942671 (-) Length   747 a.a.
NCBI ID   WP_081265509.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935428..1947671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS08800 (CEJ46_08800) kdsB 1936724..1937476 (-) 753 WP_017045182.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CEJ46_RS08805 (CEJ46_08805) - 1937476..1937655 (-) 180 WP_013856535.1 Trm112 family protein -
  CEJ46_RS08810 (CEJ46_08810) lpxK 1937636..1938643 (-) 1008 WP_064625557.1 tetraacyldisaccharide 4'-kinase -
  CEJ46_RS08815 (CEJ46_08815) msbA 1938647..1940395 (-) 1749 WP_013856533.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CEJ46_RS08820 (CEJ46_08820) comEC 1940428..1942671 (-) 2244 WP_081265509.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CEJ46_RS08825 (CEJ46_08825) - 1942678..1943187 (+) 510 WP_010319231.1 DUF2062 domain-containing protein -
  CEJ46_RS08830 (CEJ46_08830) lolE 1943324..1944568 (-) 1245 WP_064625561.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CEJ46_RS08835 (CEJ46_08835) lolD 1944569..1945255 (-) 687 WP_064625563.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CEJ46_RS08840 (CEJ46_08840) lolC 1945248..1946456 (-) 1209 WP_064625565.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  CEJ46_RS08845 (CEJ46_08845) - 1946622..1947191 (+) 570 WP_047687972.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83525.51 Da        Isoelectric Point: 9.6095

>NTDB_id=236784 CEJ46_RS08820 WP_081265509.1 1940428..1942671(-) (comEC) [Vibrio anguillarum strain JLL237]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVGYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWKALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTQRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSTLLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDPNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALIRKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=236784 CEJ46_RS08820 WP_081265509.1 1940428..1942671(-) (comEC) [Vibrio anguillarum strain JLL237]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACTGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGGTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGGCAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATTGCTCCTTTGCCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCACA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGAAAGCATTACGAGATAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCACTGATCATGTGTT
TGCTCAATGTGGCGATGATTGTCCTCAATGTCCGTATCAATACGTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTCAGCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CTGCTTATTTTTTCGGTGGAGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTCTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTACTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTACTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATCCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTGGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGCGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAATAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCCAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCCATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTCGTAAGGTGAATCCTGAGGTCGCTATTGCCTCGCTCGCCAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAGCAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.005

100

0.521
  comEC Vibrio campbellii strain DS40M4

43.725

100

0.443
  comEC Vibrio parahaemolyticus RIMD 2210633

43.593

100

0.442

Multiple sequence alignment