Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM104626_RS03855 Genome accession   NZ_CP027634
Coordinates   750185..750733 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain meC0281     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 745185..755733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104626_RS03825 (DSM104626_00768) ctsT 745228..745533 (-) 306 WP_052774393.1 hypothetical protein Machinery gene
  DSM104626_RS03830 (DSM104626_00769) proC 745530..746267 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  DSM104626_RS03835 (DSM104626_00770) fliW 746267..746656 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  DSM104626_RS03840 (DSM104626_00771) bamD 746820..747467 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  DSM104626_RS03845 (DSM104626_00772) lon 747483..749858 (+) 2376 WP_002783351.1 endopeptidase La -
  DSM104626_RS03850 (DSM104626_00773) rpsR 749914..750174 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  DSM104626_RS03855 (DSM104626_00774) ssb 750185..750733 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  DSM104626_RS03860 (DSM104626_00775) rpsF 750742..751119 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  DSM104626_RS03865 (DSM104626_00776) - 751399..752670 (+) 1272 WP_002777080.1 MFS transporter -
  DSM104626_RS03870 (DSM104626_00777) - 752670..753671 (+) 1002 WP_002780256.1 TIM barrel protein -
  DSM104626_RS03875 - 753664..754305 (-) 642 Protein_757 DUF535 family protein -
  DSM104626_RS03880 (DSM104626_00781) rseP 754517..755620 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=236777 DSM104626_RS03855 WP_002777084.1 750185..750733(-) (ssb) [Campylobacter coli strain meC0281]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=236777 DSM104626_RS03855 WP_002777084.1 750185..750733(-) (ssb) [Campylobacter coli strain meC0281]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATTGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379