Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | DSM104626_RS03825 | Genome accession | NZ_CP027634 |
| Coordinates | 745228..745533 (-) | Length | 101 a.a. |
| NCBI ID | WP_052774393.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain meC0281 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 740228..750533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM104626_RS03790 (DSM104626_00761) | - | 740643..741404 (+) | 762 | WP_072212081.1 | ATP-binding protein | - |
| DSM104626_RS03795 (DSM104626_00762) | - | 741401..742084 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| DSM104626_RS03800 (DSM104626_00763) | thiD | 742084..742896 (+) | 813 | WP_002786353.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DSM104626_RS03805 (DSM104626_00764) | thiE | 742886..743518 (+) | 633 | WP_002783359.1 | thiamine phosphate synthase | - |
| DSM104626_RS03810 (DSM104626_00765) | - | 743496..744125 (+) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| DSM104626_RS03815 (DSM104626_00766) | - | 744118..744570 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| DSM104626_RS03820 (DSM104626_00767) | - | 744567..745235 (-) | 669 | WP_002790524.1 | hypothetical protein | - |
| DSM104626_RS03825 (DSM104626_00768) | ctsT | 745228..745533 (-) | 306 | WP_052774393.1 | hypothetical protein | Machinery gene |
| DSM104626_RS03830 (DSM104626_00769) | proC | 745530..746267 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| DSM104626_RS03835 (DSM104626_00770) | fliW | 746267..746656 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| DSM104626_RS03840 (DSM104626_00771) | bamD | 746820..747467 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| DSM104626_RS03845 (DSM104626_00772) | lon | 747483..749858 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| DSM104626_RS03850 (DSM104626_00773) | rpsR | 749914..750174 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12398.22 Da Isoelectric Point: 6.0617
>NTDB_id=236775 DSM104626_RS03825 WP_052774393.1 745228..745533(-) (ctsT) [Campylobacter coli strain meC0281]
MKVAFSLLELILCIIILGLIFTSTSKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSTSKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=236775 DSM104626_RS03825 WP_052774393.1 745228..745533(-) (ctsT) [Campylobacter coli strain meC0281]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTACTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTACTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
47.959 |
97.03 |
0.465 |