Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CEJ46_RS05145 Genome accession   NZ_CP022101
Coordinates   1103939..1105345 (+) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1092704..1103697 1103939..1105345 flank 242


Gene organization within MGE regions


Location: 1092704..1105345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS05100 (CEJ46_05100) - 1093537..1094613 (-) 1077 WP_088721075.1 3-deoxy-7-phosphoheptulonate synthase -
  CEJ46_RS05110 (CEJ46_05110) - 1096162..1097253 (-) 1092 WP_088721076.1 alkene reductase -
  CEJ46_RS05115 (CEJ46_05115) - 1097264..1097893 (-) 630 WP_088721077.1 GrxB family glutaredoxin -
  CEJ46_RS05120 (CEJ46_05120) - 1097975..1099162 (-) 1188 WP_019282886.1 MFS transporter -
  CEJ46_RS05125 (CEJ46_05125) - 1099244..1099912 (-) 669 WP_088721078.1 SDR family oxidoreductase -
  CEJ46_RS05130 (CEJ46_05130) - 1100032..1100964 (+) 933 WP_088721079.1 LysR family transcriptional regulator -
  CEJ46_RS05140 (CEJ46_05140) uvrB 1101667..1103697 (+) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -
  CEJ46_RS05145 (CEJ46_05145) luxO 1103939..1105345 (+) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=236775 CEJ46_RS05145 WP_026028983.1 1103939..1105345(+) (luxO) [Vibrio anguillarum strain JLL237]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=236775 CEJ46_RS05145 WP_026028983.1 1103939..1105345(+) (luxO) [Vibrio anguillarum strain JLL237]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGCACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTGATAGAGA
GTGAACTCTTTGGTCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTACTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGAAACGCGTAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
GCAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment