Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   CEJ46_RS02845 Genome accession   NZ_CP022101
Coordinates   577676..578293 (-) Length   205 a.a.
NCBI ID   WP_088720891.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 572676..583293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS02835 (CEJ46_02835) aceF 573947..575830 (+) 1884 WP_088720889.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  CEJ46_RS02840 (CEJ46_02840) lpdA 576131..577558 (+) 1428 WP_088720890.1 dihydrolipoyl dehydrogenase -
  CEJ46_RS02845 (CEJ46_02845) opaR 577676..578293 (-) 618 WP_088720891.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  CEJ46_RS02850 (CEJ46_02850) hpt 578661..579191 (+) 531 WP_010319544.1 hypoxanthine phosphoribosyltransferase -
  CEJ46_RS02855 (CEJ46_02855) can 579276..579944 (-) 669 WP_013857670.1 carbonate dehydratase -
  CEJ46_RS02860 (CEJ46_02860) - 580195..581862 (+) 1668 WP_038171733.1 SulP family inorganic anion transporter -
  CEJ46_RS02865 (CEJ46_02865) - 582004..582924 (+) 921 WP_026027559.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23838.28 Da        Isoelectric Point: 6.2958

>NTDB_id=236771 CEJ46_RS02845 WP_088720891.1 577676..578293(-) (opaR) [Vibrio anguillarum strain JLL237]
METSIEKRHRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVRQFSNFL
ADNIDLDLHAKDNLTNLTTEMISLVIEDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHNP
EHLATLFLGIFYSLFVQANRVRDEDSMNALVKSYLSMLRIYKKDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=236771 CEJ46_RS02845 WP_088720891.1 577676..578293(-) (opaR) [Vibrio anguillarum strain JLL237]
ATGGAAACATCGATAGAAAAACGCCACAGAACTCGCTTATCACCACAAAAACGCAAACTTCAACTGATGGAGATCGCTCT
TGAAGTGTTTGCTACACGGGGAATAGGCCGAGGTGGTCACGCAGATATTGCTGAAATCGCCCAAGTTTCAGTAGCCACTG
TCTTTAACTACTTTCCAACCCGCGAAGATTTAGTCGACGACGTCCTCACCCATGTTGTACGTCAGTTTTCAAATTTCCTC
GCAGACAATATTGACCTAGATTTACATGCGAAAGATAACTTAACCAACCTAACCACTGAGATGATTAGCCTAGTCATTGA
GGATTGTCACTGGTTAAAAGTATGGTTTGAATGGAGCGCTTCAACGCGCGAAGAAGTGTGGCCACTTTTTGTTTCCACCA
ACCGTACTAATCAACTTTTGGTGCAGAATATGTTCATCAAAGCGATTGAACGTGGCGAAGTGTGCGATCAACATAATCCA
GAACATCTTGCTACGCTCTTTCTTGGCATCTTCTACTCGCTATTTGTACAAGCAAATCGCGTACGAGATGAAGATAGCAT
GAATGCTCTTGTGAAAAGCTACCTCAGCATGCTCCGCATCTATAAAAAGGATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

74.257

98.537

0.732
  hapR Vibrio cholerae strain A1552

74.257

98.537

0.732

Multiple sequence alignment