Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CEG15_RS14900 Genome accession   NZ_CP022100
Coordinates   333858..335039 (-) Length   393 a.a.
NCBI ID   WP_017050024.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 328858..340039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS14895 (CEG15_14895) cqsS 331720..333771 (+) 2052 WP_088729432.1 hybrid sensor histidine kinase/response regulator Regulator
  CEG15_RS14900 (CEG15_14900) cqsA 333858..335039 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEG15_RS14905 (CEG15_14905) - 335239..336213 (-) 975 WP_017045356.1 TDT family transporter -
  CEG15_RS14910 (CEG15_14910) clcA 336362..337759 (-) 1398 WP_088729433.1 H(+)/Cl(-) exchange transporter ClcA -
  CEG15_RS14915 (CEG15_14915) - 338252..339238 (+) 987 WP_088729434.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43529.33 Da        Isoelectric Point: 6.6121

>NTDB_id=236749 CEG15_RS14900 WP_017050024.1 333858..335039(-) (cqsA) [Vibrio anguillarum strain S3 4/9]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=236749 CEG15_RS14900 WP_017050024.1 333858..335039(-) (cqsA) [Vibrio anguillarum strain S3 4/9]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACATCTAGTCCTAGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTGAAAAATGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACTGCCTTGTTGCAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGATT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTACGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTGCAAAAACTAATCGCTCGACACGGCCCAGGGCTCATTGTGGTTGATTCGATTTACAGCACTATAGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGTGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGACACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.734

98.473

0.677

Multiple sequence alignment