Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CEG15_RS14895 Genome accession   NZ_CP022100
Coordinates   331720..333771 (+) Length   683 a.a.
NCBI ID   WP_088729432.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 326720..338771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS14885 (CEG15_14885) - 327398..328540 (+) 1143 WP_064626673.1 exonuclease SbcCD subunit D -
  CEG15_RS14890 (CEG15_14890) - 328540..331581 (+) 3042 WP_064626674.1 AAA family ATPase -
  CEG15_RS14895 (CEG15_14895) cqsS 331720..333771 (+) 2052 WP_088729432.1 hybrid sensor histidine kinase/response regulator Regulator
  CEG15_RS14900 (CEG15_14900) cqsA 333858..335039 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEG15_RS14905 (CEG15_14905) - 335239..336213 (-) 975 WP_017045356.1 TDT family transporter -
  CEG15_RS14910 (CEG15_14910) clcA 336362..337759 (-) 1398 WP_088729433.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78387.72 Da        Isoelectric Point: 5.4015

>NTDB_id=236748 CEG15_RS14895 WP_088729432.1 331720..333771(+) (cqsS) [Vibrio anguillarum strain S3 4/9]
MDVVKKIYQYAEPNLTLVGWMGFIGFPLYYYVWTYLFPQPYESMELRAICAILFAGIIFRNSTPKHLQHYLPYYYLFSIG
FCLPFFFGYMMLMNDWSTIWAMSFMASIFLHILLVHETKVMLIQAAIALVCAYFVTYGVMDAELRVMVEWPYVPIFLFTY
IFGNLFYFRNQIEHEAKVSIAKSFGAGIAHEMRNPLSALKASIEVMGSVLPNPTASKSESYTLPSKDLELIAGLLRDADE
VIRSGNETIDLLLTSIDQNRVSTSTFKKHAVKPVIEEALRSFSYKRPEDRQAVTLKVVDDFDFLGSSTLLKYVLYNLLKN
AFYYQNNDMFNIHITLKSSENCHQITVKDNGVGIEPHLLDDIFKDFYTFGKNGSYGLGLPFCRKVMHAFGGDIICRSELG
EWTEFTLTFPEYDSQAVANIKLDLMKAKSLLYIGKTSIVNRYLSEKSFYLGFQLNVLEPESALRREEFEFEFDLIFVDLQ
TLDETSDYLTKLEPKLHFTQAKVCYLYDQNQRYALTMERHLTIYPIEKHKLLLDGSAIIDELLFEAEELIADKNVIPLKQ
YDYEKRILLVDDNHSLRSFTALLLEKQGYEVLQASDGELALQMLANNSIDLVLMDIEMPIMDGISATLSIRSSTASYSKV
PIIGHTGDNSPSTIEKIRTSGMNDYVLKPADKTLLLKKLSHWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=236748 CEG15_RS14895 WP_088729432.1 331720..333771(+) (cqsS) [Vibrio anguillarum strain S3 4/9]
ATGGACGTAGTAAAAAAAATATACCAGTACGCTGAGCCGAACCTCACCCTTGTGGGATGGATGGGGTTCATTGGTTTTCC
CCTTTATTATTACGTGTGGACTTATCTCTTTCCACAACCTTATGAAAGTATGGAGTTACGGGCGATTTGCGCCATTTTAT
TTGCGGGGATTATTTTTCGCAATTCAACGCCGAAACATTTACAGCACTACTTACCTTACTATTACTTGTTTTCAATAGGA
TTTTGTTTGCCATTCTTCTTTGGCTACATGATGCTGATGAACGATTGGTCAACGATCTGGGCGATGTCGTTCATGGCGTC
TATTTTCCTCCATATCCTCTTAGTCCACGAAACAAAAGTCATGCTGATTCAAGCCGCCATTGCATTAGTATGTGCTTACT
TTGTGACTTATGGCGTAATGGACGCGGAACTGCGAGTGATGGTGGAATGGCCGTACGTACCGATTTTTCTATTTACTTAC
ATTTTTGGCAACCTGTTCTATTTTCGTAACCAAATTGAACATGAAGCGAAGGTGTCGATTGCCAAGTCTTTTGGCGCAGG
GATTGCGCATGAAATGAGAAATCCATTAAGTGCGTTAAAAGCGTCAATTGAAGTAATGGGTTCAGTATTGCCCAATCCTA
CGGCATCCAAATCAGAATCTTATACGCTACCGTCTAAAGATTTAGAGCTGATTGCTGGGCTATTAAGAGATGCTGATGAA
GTCATTCGCTCCGGTAATGAGACCATTGATTTGCTGTTAACCTCGATTGATCAAAATAGGGTCTCAACATCGACCTTTAA
AAAGCATGCTGTAAAGCCTGTTATAGAAGAGGCACTGCGCAGTTTTTCTTATAAAAGACCAGAAGACAGGCAGGCAGTGA
CTCTTAAGGTGGTGGATGACTTTGATTTTTTAGGCAGCAGTACACTGTTAAAATACGTGCTCTACAATCTACTCAAGAAT
GCGTTCTACTATCAAAATAACGATATGTTTAATATCCATATCACCTTGAAATCAAGTGAGAATTGCCACCAAATTACAGT
GAAAGACAATGGTGTTGGTATTGAACCTCATTTGCTGGACGATATTTTTAAAGACTTTTATACCTTCGGTAAAAATGGCA
GCTATGGTCTGGGGTTACCCTTTTGCCGTAAAGTAATGCATGCTTTTGGAGGGGATATTATCTGCCGTTCTGAACTTGGA
GAGTGGACGGAGTTTACTTTAACGTTTCCCGAGTATGATTCGCAAGCCGTCGCTAATATTAAACTCGATCTAATGAAGGC
GAAATCTCTGCTTTATATTGGCAAAACGAGCATAGTGAATCGTTATCTCAGTGAGAAATCGTTCTATCTTGGTTTCCAGC
TTAATGTCTTAGAGCCTGAGAGTGCTTTGCGTCGAGAAGAGTTTGAATTTGAGTTTGATCTGATCTTTGTGGATCTGCAA
ACGTTGGATGAAACGTCGGATTACTTAACCAAACTGGAACCTAAACTGCATTTTACACAAGCAAAAGTTTGCTATTTATA
TGACCAAAATCAGCGTTACGCGTTGACGATGGAGCGTCATTTAACCATTTACCCAATTGAAAAGCACAAATTGTTATTGG
ATGGGTCGGCCATTATTGATGAACTACTCTTTGAAGCGGAAGAGCTTATTGCCGATAAAAATGTTATCCCGTTAAAACAA
TATGATTATGAAAAACGAATTTTGTTGGTCGATGATAACCACTCCTTACGTAGCTTCACCGCTCTGCTGCTAGAAAAGCA
AGGGTATGAAGTACTGCAAGCGAGCGATGGGGAATTAGCATTACAAATGTTGGCCAATAATTCAATTGACTTGGTGTTAA
TGGATATTGAAATGCCGATTATGGATGGTATTTCGGCCACTTTATCTATCCGTTCATCCACCGCTTCTTACAGTAAAGTG
CCTATTATTGGGCATACGGGTGACAATAGCCCTTCAACGATAGAAAAAATCCGTACATCAGGAATGAATGATTACGTTTT
AAAACCAGCGGATAAAACGCTATTGTTAAAAAAATTAAGTCACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.562

Multiple sequence alignment