Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CEG15_RS09050 Genome accession   NZ_CP022099
Coordinates   2013713..2017075 (-) Length   1120 a.a.
NCBI ID   WP_088729030.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008713..2022075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS09030 (CEG15_09030) - 2009630..2010058 (+) 429 WP_088729028.1 HIT family protein -
  CEG15_RS09035 (CEG15_09035) - 2010171..2010401 (-) 231 WP_010318896.1 FeoC-like transcriptional regulator -
  CEG15_RS09040 (CEG15_09040) feoB 2010398..2012671 (-) 2274 WP_088729029.1 Fe(2+) transporter permease subunit FeoB -
  CEG15_RS09045 (CEG15_09045) - 2012671..2012898 (-) 228 WP_013856356.1 FeoA family protein -
  CEG15_RS09050 (CEG15_09050) tfoS 2013713..2017075 (-) 3363 WP_088729030.1 AraC family transcriptional regulator Regulator
  CEG15_RS09055 (CEG15_09055) znuA 2017248..2018126 (-) 879 WP_088729031.1 zinc ABC transporter substrate-binding protein ZnuA -
  CEG15_RS09060 (CEG15_09060) znuC 2018211..2018993 (+) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  CEG15_RS09065 (CEG15_09065) znuB 2018986..2019765 (+) 780 WP_013856353.1 zinc ABC transporter permease subunit ZnuB -
  CEG15_RS09070 (CEG15_09070) sucD 2019843..2020715 (-) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -
  CEG15_RS09075 (CEG15_09075) sucC 2020715..2021881 (-) 1167 WP_088729032.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127955.78 Da        Isoelectric Point: 6.9853

>NTDB_id=236737 CEG15_RS09050 WP_088729030.1 2013713..2017075(-) (tfoS) [Vibrio anguillarum strain S3 4/9]
MKGKNDYFKALFWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAPLNNNSITKIVTRSDNKGYLFLTRQGLYQVDAENWQEPKLIYPGEVHDFAQIDDHSLWIATHTGIV
IYYLQTKKMIETSMLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSVWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEIVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRSLSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPHPQNS
MINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVGQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNYYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=236737 CEG15_RS09050 WP_088729030.1 2013713..2017075(-) (tfoS) [Vibrio anguillarum strain S3 4/9]
TTGAAAGGAAAGAATGACTATTTTAAAGCTTTGTTCTGGATCTTGGGTTTCCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTCCATGGCAAAGTGGTTTTCTTTGATGGACAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGCT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGTAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAGTATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAGGGTGGGATTTGGATCGCAACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACCGCTCAACAATAATTCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTGTTTTTAACTCGACAAGGGTTATACCAAGTCGATGCTGAAAATTGGCAAGAGCCTAAAC
TTATTTACCCAGGAGAAGTGCATGATTTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATTGTT
ATTTATTACTTGCAGACAAAAAAGATGATAGAAACGAGCATGTTACCTCTTAAGCTGCGTTCGAATGATACTAAACACCT
TGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATTTGTGGTCATATCAGTTGGCCGATAACTCGCTCA
CCGATTTCGGTTCGGTATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGTGATGTTTGGTTTGCGAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGATAGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGCTTTG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACAAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGCCGTGGTCGTTTTCAGACACTAGAATTGGAATATGGAAGTTCGATAAGCTTTTTATT
TGGTGCATTGCCAGAATCGAGATCCTTATCATTGGAGTATCGTATAGCGGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTGTTACCTGGACACTATCGTTTGCTGGTGAGAAATTACAGTCCACATCCGCAAAACAGT
ATGATAAACAGCCTATCATTTATTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGGACAGATGTTAGATTCTATTACTCCTACATTAAATCAGCTGATTTATCGCTCGCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAACGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGACCTATCGATCATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTATAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAATCCATCAATAGTGATAAGCGTATCTCTGGTTTTGAACTAGAGGAG
ATGCAACTGTTAGTACAGCGTAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTAGAAAAATTGGTACACAATTACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCTAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGACTAGAGAAAGCGTGCCAATATTTGCTTGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.374

99.821

0.493

Multiple sequence alignment