Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CEG15_RS04620 Genome accession   NZ_CP022099
Coordinates   994274..995680 (+) Length   468 a.a.
NCBI ID   WP_088728738.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 989274..1000680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS04600 (CEG15_04600) - 989579..990247 (-) 669 WP_019282887.1 SDR family oxidoreductase -
  CEG15_RS04605 (CEG15_04605) - 990367..991299 (+) 933 WP_064624849.1 LysR family transcriptional regulator -
  CEG15_RS04615 (CEG15_04615) uvrB 992002..994032 (+) 2031 WP_088729321.1 excinuclease ABC subunit UvrB -
  CEG15_RS04620 (CEG15_04620) luxO 994274..995680 (+) 1407 WP_088728738.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CEG15_RS04625 (CEG15_04625) luxU 995685..996023 (+) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  CEG15_RS04630 (CEG15_04630) - 996020..996910 (-) 891 WP_088721081.1 YvcK family protein -
  CEG15_RS04635 (CEG15_04635) moaA 997222..998211 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  CEG15_RS04640 (CEG15_04640) moaB 998281..998793 (+) 513 WP_088728739.1 molybdenum cofactor biosynthesis protein B -
  CEG15_RS04645 (CEG15_04645) moaC 998804..999304 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CEG15_RS04650 (CEG15_04650) moaD 999297..999542 (+) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  CEG15_RS04655 (CEG15_04655) moaE 999545..1000015 (+) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52218.66 Da        Isoelectric Point: 6.0312

>NTDB_id=236727 CEG15_RS04620 WP_088728738.1 994274..995680(+) (luxO) [Vibrio anguillarum strain S3 4/9]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAAFSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=236727 CEG15_RS04620 WP_088728738.1 994274..995680(+) (luxO) [Vibrio anguillarum strain S3 4/9]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGTAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTTCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGCACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTGATAGAGA
GTGAACTCTTTGGTCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTACTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGAAACGCGTAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
GCAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.419

95.94

0.848
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment