Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   TT_RS06245 Genome accession   NC_005835
Coordinates   1198960..1199544 (+) Length   194 a.a.
NCBI ID   WP_008633233.1    Uniprot ID   Q72I96
Organism   Thermus thermophilus HB27     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1193960..1204544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT_RS06225 (TT_C1232) - 1194682..1196397 (+) 1716 WP_011173638.1 hypothetical protein -
  TT_RS06230 (TT_C1233) - 1196440..1197633 (+) 1194 WP_011173639.1 MFS transporter -
  TT_RS06235 (TT_C1234) hemB 1197630..1198611 (-) 982 Protein_1237 porphobilinogen synthase -
  TT_RS06240 (TT_C1235) - 1198642..1198959 (+) 318 WP_008633232.1 YbaB/EbfC family nucleoid-associated protein -
  TT_RS06245 (TT_C1236) recR 1198960..1199544 (+) 585 WP_008633233.1 recombination mediator RecR Machinery gene
  TT_RS06250 (TT_C1237) - 1199547..1199930 (+) 384 WP_011173641.1 roadblock/LC7 domain-containing protein -
  TT_RS06255 (TT_C1238) - 1199918..1200259 (+) 342 WP_011173642.1 roadblock/LC7 domain-containing protein -
  TT_RS06260 (TT_C1239) - 1200244..1200582 (+) 339 WP_011173643.1 roadblock/LC7 domain-containing protein -
  TT_RS06265 (TT_C1240) - 1200579..1200845 (+) 267 WP_011173644.1 DUF3467 domain-containing protein -
  TT_RS06270 (TT_C1241) - 1200905..1202710 (-) 1806 WP_041443539.1 S9 family peptidase -
  TT_RS06275 (TT_C1242) - 1202778..1203506 (+) 729 WP_011173646.1 Nif3-like dinuclear metal center hexameric protein -
  TT_RS06280 (TT_C1243) tmk 1203507..1204103 (+) 597 WP_011173647.1 dTMP kinase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21207.39 Da        Isoelectric Point: 5.2052

>NTDB_id=23671 TT_RS06245 WP_008633233.1 1198960..1199544(+) (recR) [Thermus thermophilus HB27]
MRYPESLLKLTRALSRLPGIGPKTAQRLALHLAFHKEEAEALAEALEGLKRVRACRECGNLAEGELCPICQDEDRDRSLL
AVVESVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFRRLEGVEEVVLATSMTVEGEATALYLAEELKKRG
VRVTRPAYGLPVGGSLEYADEVTLGRALEGRRPV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=23671 TT_RS06245 WP_008633233.1 1198960..1199544(+) (recR) [Thermus thermophilus HB27]
ATGCGCTACCCGGAAAGCCTCCTCAAGCTCACCCGGGCCCTCTCCCGCCTCCCCGGCATCGGCCCCAAGACGGCCCAGCG
CCTGGCCCTCCACCTCGCCTTCCACAAGGAGGAGGCCGAGGCCCTGGCGGAGGCCCTGGAGGGGCTCAAGCGGGTCCGGG
CCTGCCGCGAGTGCGGCAACCTGGCCGAGGGGGAGCTCTGCCCCATCTGCCAGGACGAGGACCGGGACCGCTCCCTCCTC
GCCGTGGTGGAGAGCGTGGCCGACCTGTACGCCCTGGAGCGGAGCGGGGAGTTCCGGGGCCTCTACCACGTCCTGGGAGG
GGCCTTGAACCCCCTGGAGGGCATCGGCCCCAAGGAGCTCAACCTGGAGGGCCTCTTCCGGCGGCTGGAAGGCGTGGAGG
AGGTGGTCCTCGCCACCTCCATGACCGTGGAGGGGGAGGCCACCGCCCTCTACCTCGCCGAGGAGCTGAAGAAGCGGGGG
GTGCGGGTGACCCGGCCCGCCTACGGCCTCCCCGTGGGGGGGAGCCTGGAGTACGCCGACGAGGTGACCCTGGGCCGGGC
CCTGGAGGGGAGGCGGCCCGTCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-165)

RecR protein (RecR_ZnF)

(38-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72I96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.557
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

100

0.49
  recR Streptococcus pneumoniae R6

45.128

100

0.454