Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEP67_RS04490 Genome accession   NZ_CP022096
Coordinates   946403..946825 (-) Length   140 a.a.
NCBI ID   WP_002471616.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_288     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 941403..951825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP67_RS04475 (CEP67_04485) - 941752..942351 (-) 600 WP_240624863.1 LCP family protein -
  CEP67_RS04480 (CEP67_04490) - 943176..945197 (+) 2022 WP_088606365.1 LysM peptidoglycan-binding domain-containing protein -
  CEP67_RS04485 (CEP67_04495) - 945308..946003 (-) 696 WP_002471612.1 transglycosylase family protein -
  CEP67_RS04490 (CEP67_04500) ssb 946403..946825 (-) 423 WP_002471616.1 single-stranded DNA-binding protein Machinery gene
  CEP67_RS04495 (CEP67_04505) - 947018..947458 (+) 441 WP_002471662.1 YwpF-like family protein -
  CEP67_RS04500 (CEP67_04510) fabZ 947558..947998 (-) 441 WP_002471640.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CEP67_RS04505 (CEP67_04515) murA 948048..949313 (-) 1266 WP_002471648.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CEP67_RS04510 (CEP67_04520) - 949641..949874 (-) 234 WP_040806344.1 DUF1146 family protein -
  CEP67_RS04515 (CEP67_04525) - 950063..950497 (-) 435 WP_002471631.1 carboxymuconolactone decarboxylase family protein -
  CEP67_RS04520 (CEP67_04530) - 950682..951041 (+) 360 WP_002471603.1 DUF488 domain-containing protein -
  CEP67_RS04525 (CEP67_04535) - 951119..951523 (-) 405 WP_040806347.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16083.14 Da        Isoelectric Point: 6.7560

>NTDB_id=236650 CEP67_RS04490 WP_002471616.1 946403..946825(-) (ssb) [Staphylococcus pettenkoferi strain FDAARGOS_288]
MLNNITVVGRLTKHPQIYDKEGRKRATFTVAVERNYRDKNNQPIVDFLFCKAFGKLAENIEHYLKQGSLVGITGQLHSSK
YDKEGQTHFISEINIEYIKFMSSPKSDNTVQHHTSTIESYNPFDNPDPLTINPDEIIEIV

Nucleotide


Download         Length: 423 bp        

>NTDB_id=236650 CEP67_RS04490 WP_002471616.1 946403..946825(-) (ssb) [Staphylococcus pettenkoferi strain FDAARGOS_288]
ATGCTAAACAATATTACAGTAGTAGGGCGACTTACTAAACATCCTCAAATTTATGATAAGGAAGGGAGGAAGAGAGCGAC
TTTCACTGTTGCGGTGGAGCGCAATTATCGTGATAAGAACAATCAACCCATCGTTGACTTTCTATTCTGTAAAGCCTTTG
GGAAACTAGCTGAGAATATTGAACACTACCTCAAGCAAGGTTCTCTCGTAGGCATTACCGGTCAATTACACTCAAGCAAA
TACGATAAAGAAGGCCAGACACATTTCATTTCCGAGATCAATATCGAATATATTAAGTTTATGTCATCACCCAAATCAGA
CAATACAGTCCAACATCACACTTCAACTATAGAATCATATAATCCATTTGATAATCCAGATCCCTTAACTATCAATCCAG
ACGAAATTATTGAAATTGTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

59.398

95

0.564
  ssb Staphylococcus aureus MW2

58.647

95

0.557

Multiple sequence alignment