Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CEQ33_RS12050 Genome accession   NZ_CP022093
Coordinates   2377633..2378052 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_355     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2372633..2383052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ33_RS12020 (CEQ33_12050) atpD 2372750..2374162 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  CEQ33_RS12025 (CEQ33_12055) - 2374182..2374586 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  CEQ33_RS12030 (CEQ33_12060) - 2374848..2375081 (+) 234 WP_011302682.1 DUF1146 family protein -
  CEQ33_RS12035 (CEQ33_12065) murA 2375188..2376453 (+) 1266 WP_011302683.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CEQ33_RS12040 (CEQ33_12070) fabZ 2376508..2376945 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CEQ33_RS12045 (CEQ33_12075) - 2377002..2377442 (-) 441 WP_002482730.1 YwpF-like family protein -
  CEQ33_RS12050 (CEQ33_12080) ssb 2377633..2378052 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  CEQ33_RS12055 (CEQ33_12085) - 2378478..2379194 (+) 717 WP_011302685.1 transglycosylase family protein -
  CEQ33_RS12060 (CEQ33_12090) tenA 2379501..2380190 (+) 690 WP_011302686.1 thiaminase II -
  CEQ33_RS12065 (CEQ33_12095) thiD 2380183..2381004 (+) 822 WP_011302687.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CEQ33_RS12070 (CEQ33_12100) thiM 2380997..2381788 (+) 792 WP_011302688.1 hydroxyethylthiazole kinase -
  CEQ33_RS12075 (CEQ33_12105) thiE 2381788..2382426 (+) 639 WP_011302689.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=236625 CEQ33_RS12050 WP_011302684.1 2377633..2378052(+) (ssb) [Staphylococcus saprophyticus strain FDAARGOS_355]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=236625 CEQ33_RS12050 WP_011302684.1 2377633..2378052(+) (ssb) [Staphylococcus saprophyticus strain FDAARGOS_355]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment