Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7A05_RS06560 Genome accession   NZ_CP027591
Coordinates   1029453..1030190 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-3011     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024453..1035190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A05_RS06525 yfiL 1024610..1024975 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C7A05_RS06530 aroF 1025185..1026255 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C7A05_RS06535 tyrA 1026266..1027387 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C7A05_RS06540 pheA 1027430..1028590 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C7A05_RS06545 pheL 1028690..1028737 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C7A05_RS06550 raiA 1028841..1029182 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C7A05_RS06560 comL 1029453..1030190 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C7A05_RS06565 rluD 1030325..1031305 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7A05_RS06570 yfiH 1031302..1032033 (+) 732 WP_062882642.1 purine nucleoside phosphorylase YfiH -
  C7A05_RS06575 clpC 1032163..1034736 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=236462 C7A05_RS06560 WP_000197686.1 1029453..1030190(-) (comL) [Escherichia coli strain 2014C-3011]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=236462 C7A05_RS06560 WP_000197686.1 1029453..1030190(-) (comL) [Escherichia coli strain 2014C-3011]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376