Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   A6J90_RS08840 Genome accession   NZ_CP022076
Coordinates   1692066..1692377 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_262     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687066..1697377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J90_RS08820 (A6J90_08820) ctsE 1687935..1689494 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  A6J90_RS08825 (A6J90_08825) ctsX 1689484..1690071 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  A6J90_RS08830 (A6J90_08830) ctsP 1690075..1690683 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  A6J90_RS08835 (A6J90_08835) ctsD 1690676..1692088 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A6J90_RS08840 (A6J90_08840) ctsR 1692066..1692377 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  A6J90_RS08845 (A6J90_08845) nifJ 1692401..1695961 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  A6J90_RS08850 (A6J90_08850) - 1696054..1696695 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=236450 A6J90_RS08840 WP_002862131.1 1692066..1692377(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_262]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=236450 A6J90_RS08840 WP_002862131.1 1692066..1692377(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_262]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment