Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6998_RS14930 Genome accession   NZ_CP027587
Coordinates   2754654..2755391 (+) Length   245 a.a.
NCBI ID   WP_106878486.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4974     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2749654..2760391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6998_RS14915 clpC 2750108..2752681 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6998_RS14920 yfiH 2752811..2753542 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6998_RS14925 rluD 2753539..2754519 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6998_RS14930 comL 2754654..2755391 (+) 738 WP_106878486.1 outer membrane protein assembly factor BamD Machinery gene
  C6998_RS14940 raiA 2755662..2756003 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6998_RS14945 pheL 2756107..2756154 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6998_RS14950 pheA 2756253..2757413 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6998_RS14955 tyrA 2757456..2758577 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6998_RS14960 aroF 2758588..2759658 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6998_RS14965 yfiL 2759868..2760233 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27760.29 Da        Isoelectric Point: 5.8432

>NTDB_id=236399 C6998_RS14930 WP_106878486.1 2754654..2755391(+) (comL) [Escherichia coli strain 2013C-4974]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVSGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=236399 C6998_RS14930 WP_106878486.1 2754654..2755391(+) (comL) [Escherichia coli strain 2013C-4974]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGAGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376