Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7A02_RS13830 Genome accession   NZ_CP027584
Coordinates   2616090..2616827 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 00-3076     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611090..2621827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A02_RS13815 clpC 2611544..2614117 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C7A02_RS13820 yfiH 2614247..2614978 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  C7A02_RS13825 rluD 2614975..2615955 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7A02_RS13830 comL 2616090..2616827 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C7A02_RS13840 raiA 2617098..2617439 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C7A02_RS13845 pheL 2617543..2617590 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C7A02_RS13850 pheA 2617689..2618849 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C7A02_RS13855 tyrA 2618892..2620013 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C7A02_RS13860 aroF 2620024..2621094 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C7A02_RS13865 yfiL 2621304..2621669 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=236242 C7A02_RS13830 WP_000197686.1 2616090..2616827(+) (comL) [Escherichia coli strain 00-3076]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=236242 C7A02_RS13830 WP_000197686.1 2616090..2616827(+) (comL) [Escherichia coli strain 00-3076]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment