Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6999_RS30570 Genome accession   NZ_CP027582
Coordinates   5652326..5653063 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4538     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5647326..5658063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6999_RS30535 yfiL 5647484..5647849 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6999_RS30540 aroF 5648059..5649129 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6999_RS30545 tyrA 5649140..5650261 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6999_RS30550 pheA 5650304..5651464 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6999_RS30555 pheL 5651563..5651610 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6999_RS30560 raiA 5651714..5652055 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6999_RS30570 comL 5652326..5653063 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6999_RS30575 rluD 5653198..5654178 (+) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6999_RS30580 yfiH 5654175..5654906 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6999_RS30585 clpC 5655036..5657609 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=236209 C6999_RS30570 WP_000197686.1 5652326..5653063(-) (comL) [Escherichia coli strain 2013C-4538]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=236209 C6999_RS30570 WP_000197686.1 5652326..5653063(-) (comL) [Escherichia coli strain 2013C-4538]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment