Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CEP64_RS26475 Genome accession   NZ_CP022046
Coordinates   2476078..2476605 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain FDAARGOS_285     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2459401..2475674 2476078..2476605 flank 404


Gene organization within MGE regions


Location: 2459401..2476605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP64_RS26360 (CEP64_12315) - 2459401..2460204 (+) 804 WP_088592602.1 hypothetical protein -
  CEP64_RS26365 (CEP64_12320) - 2460249..2461139 (-) 891 WP_078354861.1 PhzF family phenazine biosynthesis isomerase -
  CEP64_RS26370 (CEP64_12325) - 2461179..2461583 (-) 405 WP_078354860.1 nucleoside 2-deoxyribosyltransferase -
  CEP64_RS26375 (CEP64_12330) - 2461586..2462431 (-) 846 WP_078354859.1 DUF2785 domain-containing protein -
  CEP64_RS26380 (CEP64_12335) - 2462472..2463020 (-) 549 WP_158262750.1 nucleotidyltransferase family protein -
  CEP64_RS26385 (CEP64_12340) - 2463221..2463531 (+) 311 Protein_2419 Abi family protein -
  CEP64_RS26390 (CEP64_12345) - 2464531..2465157 (-) 627 WP_088592603.1 hypothetical protein -
  CEP64_RS26395 (CEP64_12355) - 2465753..2466097 (-) 345 WP_088592605.1 hypothetical protein -
  CEP64_RS26400 (CEP64_12360) - 2466085..2466576 (-) 492 WP_201260672.1 pathogenicity island protein -
  CEP64_RS26405 (CEP64_12365) - 2467447..2467869 (-) 423 WP_088592606.1 hypothetical protein -
  CEP64_RS26410 (CEP64_12370) - 2468067..2468273 (-) 207 WP_088592607.1 hypothetical protein -
  CEP64_RS26415 (CEP64_12375) - 2468478..2469353 (-) 876 WP_088592608.1 DnaA ATPase domain-containing protein -
  CEP64_RS26420 (CEP64_12380) - 2469368..2470252 (-) 885 WP_088592609.1 DnaD domain-containing protein -
  CEP64_RS26425 (CEP64_12385) - 2470312..2470686 (-) 375 WP_088592610.1 hypothetical protein -
  CEP64_RS26430 (CEP64_12390) - 2470687..2471070 (-) 384 WP_088592611.1 pathogenicity island protein -
  CEP64_RS26435 (CEP64_12395) - 2471144..2471326 (-) 183 WP_088592612.1 hypothetical protein -
  CEP64_RS26440 (CEP64_12400) - 2471343..2471609 (-) 267 WP_088592613.1 helix-turn-helix domain-containing protein -
  CEP64_RS26445 (CEP64_12405) - 2471613..2472395 (-) 783 WP_088592614.1 Rha family transcriptional regulator -
  CEP64_RS26450 (CEP64_12410) - 2472412..2472624 (-) 213 WP_088592615.1 helix-turn-helix transcriptional regulator -
  CEP64_RS26455 (CEP64_12415) - 2472815..2473735 (+) 921 WP_088592616.1 helix-turn-helix domain-containing protein -
  CEP64_RS26460 (CEP64_12420) - 2473768..2474991 (+) 1224 WP_088592617.1 tyrosine-type recombinase/integrase -
  CEP64_RS26465 (CEP64_12425) - 2474988..2475674 (+) 687 WP_088592618.1 hypothetical protein -
  CEP64_RS26470 (CEP64_12430) rpsR 2475776..2476018 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  CEP64_RS26475 (CEP64_12435) ssbA 2476078..2476605 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=236170 CEP64_RS26475 WP_025906200.1 2476078..2476605(-) (ssbA) [Mammaliicoccus sciuri strain FDAARGOS_285]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=236170 CEP64_RS26475 WP_025906200.1 2476078..2476605(-) (ssbA) [Mammaliicoccus sciuri strain FDAARGOS_285]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537

Multiple sequence alignment